s.class: 2-D scatter plot with a partition in classes (levels of a...

In adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data

Description

This function represents a two dimensional scatter plot grouping points to the same class. Classes are represented by ellipses, stars and/or convex hulls.

Usage

s.class(dfxy, fac, xax = 1, yax = 2, wt = rep(1, NROW(fac)), labels = levels(fac),
  ellipseSize = 1.5, starSize = 1, chullSize = NULL, col = NULL, facets = NULL,
  plot = TRUE, storeData = TRUE, add = FALSE, pos = -1, ...)

Arguments

dfxy	a data frame used to produce the plot
fac	a factor (or a matrix of factors) splitting the rows of dfxy
xax	an integer (or a vector) indicating which column(s) of dfxy is(are) plotted on the x-axis
yax	an integer (or a vector) indicating which column(s) of dfxy is(are) plotted on the y-axis
wt	a vector of weights for fac
labels	a character vector containing the class' labels
ellipseSize	a positive number for ellipse size
starSize	a number between 0 and 1 for the size of the stars segments joining the stars' center (centroids) and the matching points
chullSize	NULL or a vector of numbers between 0 and 1 for the fraction of points included in the convex hull
col	a color or a colors vector to color points, ellipses, labels, lines and polygons
facets	a factor splitting the rows of dfxy so that subsets of the data are represented on different sub-graphics
plot	a logical indicating if the graphics is displayed
storeData	a logical indicating if the data should be stored in the returned object. If FALSE, only the names of the data arguments are stored
add	a logical. If TRUE, the graphic is superposed to the graphics already plotted in the current device
pos	an integer indicating the position of the environment where the data are stored, relative to the environment where the function is called. Useful only if storeData is FALSE
...	additional graphical parameters (see adegpar and trellis.par.get)

Details

Graphical parameters for ellipses, stars and convex hulls are available in pellipses, plines and ppolygons of adegpar.

Value

An object of class ADEg (subclass S2.class) or ADEgS (if add is TRUE and/or if facets or multidimensional fac or vectors for xax/yax are used).
The result is displayed if plot is TRUE.

Author(s)

Alice Julien-Laferriere, Aurelie Siberchicot [e-mail] and Stephane Dray

See Also

S2.class ADEg.S2

Examples

xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1))
posi <- factor(xy$x > 0) : factor(xy$y > 0)
coul <- c("black", "red", "green", "blue")
s.class(xy, fac = posi, col = coul, psub.text = "example s.class", pellipses.col = coul)

s.class(xy, fac = posi, ppoints.cex = 1.5, ellipseSize = 0, starSize = 0,
  ppolygons = list(border = 4:1, col = 1:4, lty = 1:4, lwd = 2, alpha = 0.4),
  chullSize = c(1, 0.5))

s.class(xy, fac = posi, facets = posi, ppoints.cex = 1.5, ellipseSize = 0, starSize = 0,
  ppolygons = list(border = 4:1, col = 1:4, lty = 1:4, lwd = 2, alpha = 0.4),
  chullSize = c(1, 0.5))
  
## Not run:  
data(banque, package = "ade4")
dudi1 <- ade4::dudi.acm(banque, scannf = FALSE)
col <- rainbow(length(levels(banque[, 20])))
g1 <- s.label(dudi1$li, psub = list(text = "Factorial map from ACM", cex = 1.5, 
  position = "topleft"), plot = FALSE)
g2 <- s.class(dudi1$li, banque[, 20], psub = list(text = names(banque)[20], cex = 1.5, 
  position = "bottomright"), ellipseSize = 0, starSize = 0.5, pgrid.text.cex = 0, plot = FALSE)
g3 <- s.class(dudi1$li, banque[, 20], starSize = 0, ellipseSize = 2, pgrid.text.cex = 0, 
  plabels.cex = 1.5, plot = FALSE)
g4 <- s.class(dudi1$li, banque[, 20], psub = list(text = names(banque)[20], 
  position = "topright"), pgrid.text.cex = 0, col = col, pellipses.lwd = 1.5, plot = FALSE)
G1 <- ADEgS(c(g1, g2, g3, g4), layout = c(2, 2))
G2 <- s.class(dudi1$li, banque, psub = list(position = "topleft"), pgrid.text.cex = 0, 
  starSize = 0, ppoints.cex = 0)

## End(Not run)

Example output

adegraphics documentation built on May 2, 2019, 4:48 p.m.