setRegFiles: Set registration files.

Description Usage Arguments Value Author(s) References See Also

Description

Link the files necessary for registration to the appropriate slots in the registration object. Registration requires a working copy of FSL. Files must be copied from the FSL directory to the /registration directory of the ARF experiment. By default the standard filenames used by FSL are used.

Usage

1
2
3
4
setRegFiles(registration, examp2stand = "example_func2standard.mat", 
 examp2high = "example_func2highres.mat", high2stand = "highres2standard.mat", 
 example_func = "example_func.nii.gz", highres = "highres.nii.gz", 
 standard = "standard.nii.gz")

Arguments

registration

Object of class registration to link to.

examp2stand

ARF to standard space affine transformation matrix file.

examp2high

ARF to high resolution affine transformation matrix file.

high2stand

High resolution to standard space affine transformation matrix file.

example_func

Nifti file in ARF native space.

highres

T1 weighted structural image.

standard

Standard space image (MNI152).

Value

Returns a registration object with the appropriate slots filled.

Author(s)

Wouter D. Weeda - w.d.weeda@gmail.com

References

See http://www.fmrib.ox.ac.uk/fsl/ on how to obtain FSL and licences.

See Also

registration, createRegs, setRegParams


arf3DS4 documentation built on May 2, 2019, 5:16 p.m.