writeBiclusterResults: writeBiclusterResults

Description Usage Arguments Author(s) Examples

Description

Write bicluster results to a file

Usage

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writeBiclusterResults(fileName, bicResult, bicName, geneNames, arrayNames,
  append=FALSE, delimiter=" ")

Arguments

fileName

Path to the file were biclusters are written.

bicResult

Biclusters results as a Biclust class.

bicName

Brief description for the biclustering algorithm used.

geneNames

Array of strings with gene (row) names in the analyzed data matrix

arrayNames

Array of strings with condition (column) names in the analyzed data matrix

append

If true, adds the bicluster results to previous information in the text file, if it exists. Default false.

delimiter

delimiter string between gene and condition names. Default " ".

Author(s)

Rodrigo Santamaria rodri@usal.es

Examples

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  data(BicatYeast)
  res <- biclust(BicatYeast, method=BCCC(), delta=1.5,  alpha=1, number=10)
  writeBiclusterResults("results.txt", res,"CC with delta 1.5", dimnames(BicatYeast)[1][[1]],
    dimnames(BicatYeast)[2][[1]])
  


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