plotclust: Barplot of Bicluster

In biclust: BiCluster Algorithms

Description

Draws a graph to compare the values inside the diffrent biclusters with the values outside the bicluster

Usage

plotclust(res,x,bicluster=TRUE,legende=FALSE,noC=5,wyld=3,Titel="Plotclust",...)

Arguments

x	The data matrix
res	BiclustResult object if bicluster=TRUE else a normal kcca object.
bicluster	If TRUE,res is treated as a BiclustResult object
legende	Draws a legend.
noC	Number of Clusters drawn
wyld	Gives the distance between plot and axis.
Titel	Gives the title of the plot.
...	Additional plot options

Author(s)

Sebastian Kaiser [e-mail]

See Also

bubbleplot for simultaneous representation of biclusters. parallelCoordinatesfor single representation of biclusters as lines of gene or condition profiles. drawHeatmapfor Heatmap representation of biclusters.

Examples

  s2=matrix(rnorm(400),20,20)
  s2[12:16,12:16]=rnorm(25,3,0.3)
  set.seed(1)
  bics <- biclust(s2,BCPlaid(), back.fit = 2, shuffle = 3, fit.model = ~m + a + b,
  iter.startup = 5, iter.layer = 30,  verbose = TRUE)
  plotclust(bics,s2)

biclust documentation built on May 2, 2019, 5:56 p.m.