caret: Classification and Regression Training

Misc functions for training and plotting classification and regression models

Author
Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer and the R Core Team
Date of publication
2014-06-03 16:38:57
Maintainer
Max Kuhn <Max.Kuhn@pfizer.com>
License
GPL-2
Version
6.0-30
URLs

View on R-Forge

Man pages

as.table.confusionMatrix
Save Confusion Table Results
avNNet
Neural Networks Using Model Averaging
bag
A General Framework For Bagging
bagEarth
Bagged Earth
bagFDA
Bagged FDA
BloodBrain
Blood Brain Barrier Data
BoxCoxTrans
Box-Cox and Exponential Transformations
calibration
Probability Calibration Plot
caret-internal
Internal Functions
cars
Kelly Blue Book resale data for 2005 model year GM cars
classDist
Compute and predict the distances to class centroids
confusionMatrix
Create a confusion matrix
confusionMatrix.train
Estimate a Resampled Confusion Matrix
cox2
COX-2 Activity Data
createDataPartition
Data Splitting functions
dhfr
Dihydrofolate Reductase Inhibitors Data
diff.resamples
Inferential Assessments About Model Performance
dotplot.varImp.train
Create a dotplot of variable importance values
downSample
Down- and Up-Sampling Imbalanced Data
dummyVars
Create A Full Set of Dummy Variables
extractPrediction
Extract predictions and class probabilities from train...
featurePlot
Wrapper for Lattice Plotting of Predictor Variables
filterVarImp
Calculation of filter-based variable importance
findCorrelation
Determine highly correlated variables
findLinearCombos
Determine linear combinations in a matrix
format.bagEarth
Format 'bagEarth' objects
generateExprVal.method.trimMean
Generate Expression Values from Probes
GermanCredit
German Credit Data
icr
Independent Component Regression
knn3
k-Nearest Neighbour Classification
knnreg
k-Nearest Neighbour Regression
lattice
Lattice functions for plotting resampling results
lattice.diff.resamples
Lattice Functions for Visualizing Resampling Differences
lattice.resamples
Lattice Functions for Visualizing Resampling Results
lattice.rfe
Lattice functions for plotting resampling results of...
lift
Lift Plot
maxDissim
Maximum Dissimilarity Sampling
mdrr
Multidrug Resistance Reversal (MDRR) Agent Data
modelLookup
Tools for Models Available in 'train'
models
A List of Available Models in train
nearZeroVar
Identification of near zero variance predictors
normalize2Reference
Quantile Normalize Columns of a Matrix Based on a Reference...
normalize.AffyBatch.normalize2Reference
Quantile Normalization to a Reference Distribution
nullModel
Fit a simple, non-informative model
oil
Fatty acid composition of commercial oils
panel.lift
Lattice Panel Functions for Lift Plots
panel.needle
Needle Plot Lattice Panel
pcaNNet
Neural Networks with a Principal Component Step
plotClassProbs
Plot Predicted Probabilities in Classification Models
plotObsVsPred
Plot Observed versus Predicted Results in Regression and...
plot.rfe
Plot RFE Performance Profiles
plot.train
Plot Method for the train Class
plot.varImp.train
Plotting variable importance measures
plsda
Partial Least Squares and Sparse Partial Least Squares...
postResample
Calculates performance across resamples
pottery
Pottery from Pre-Classical Sites in Italy
prcomp.resamples
Principal Components Analysis of Resampling Results
predict.bagEarth
Predicted values based on bagged Earth and FDA models
predict.knn3
Predictions from k-Nearest Neighbors
predict.knnreg
Predictions from k-Nearest Neighbors Regression Model
predictors
List predictors used in the model
preProcess
Pre-Processing of Predictors
print.confusionMatrix
Print method for confusionMatrix
print.train
Print Method for the train Class
resampleHist
Plot the resampling distribution of the model statistics
resamples
Collation and Visualization of Resampling Results
resampleSummary
Summary of resampled performance estimates
rfe
Backwards Feature Selection
rfeControl
Controlling the Feature Selection Algorithms
rfeFunctions
Backwards Feature Selection Helper Functions
sbf
Selection By Filtering (SBF)
sbfControl
Control Object for Selection By Filtering (SBF)
sbfFunctions
Selection By Filtering (SBF) Helper Functions
segmentationData
Cell Body Segmentation
selection
Selecting tuning Parameters
sensitivity
Calculate sensitivity, specificity and predictive values
spatialSign
Compute the multivariate spatial sign
summary.bagEarth
Summarize a bagged earth or FDA fit
tecator
Fat, Water and Protein Content of Meat Samples
train
Fit Predictive Models over Different Tuning Parameters
trainControl
Control parameters for train
twoClassSim
Two-Class Simulations
update.train
Update or Re-fit a Model
varImp
Calculation of variable importance for regression and...

Files in this package

caret/.Rinstignore
caret/DESCRIPTION
caret/NAMESPACE
caret/R
caret/R/BoxCoxTrans.R
caret/R/PLS.R
caret/R/aaa.R
caret/R/adaptive.R
caret/R/additive.R
caret/R/aucRoc.R
caret/R/avNNet.R
caret/R/bag.R
caret/R/bagEarth.R
caret/R/bagFDA.R
caret/R/basic2x2Stats.R
caret/R/calibration.R
caret/R/caretTheme.R
caret/R/classDist.R
caret/R/classLevels.R
caret/R/confusionMatrix.R
caret/R/createDataPartition.R
caret/R/createFolds.R
caret/R/createModel.R
caret/R/createResample.R
caret/R/createTimeSlices.R
caret/R/diag.R
caret/R/dotplot.varImp.train.R
caret/R/dummyVar.R
caret/R/expoTrans.R
caret/R/extractPrediction.R
caret/R/extractProb.R
caret/R/featurePlot.R
caret/R/filterVarImp.R
caret/R/findCorrelation.R
caret/R/findLinearCombos.R
caret/R/format.bagEarth.R
caret/R/generateExprVal.method.trimMean.R
caret/R/getTrainPerf.R
caret/R/ggplot.R
caret/R/icr.R
caret/R/knn3.R
caret/R/knn3Train.R
caret/R/knnreg.R
caret/R/lattice.train.R
caret/R/lift.R
caret/R/maxDissim.R
caret/R/misc.R
caret/R/modelLookup.R
caret/R/nearZeroVar.R
caret/R/negPredValue.R
caret/R/normalize.AffyBatch.normalize2Reference.R
caret/R/normalize2Reference.R
caret/R/panel.needle.R
caret/R/pcaNNet.R
caret/R/plot.train.R
caret/R/plot.varImp.train.R
caret/R/plotClassProbs.R
caret/R/plotObsVsPred.R
caret/R/plsda.R
caret/R/posPredValue.R
caret/R/postResample.R
caret/R/preProcess.R
caret/R/predict.PLS.R
caret/R/predict.train.R
caret/R/predictionFunction.R
caret/R/predictors.R
caret/R/print.confusionMatrix.R
caret/R/print.mars.R
caret/R/print.train.R
caret/R/print.varImp.train.R
caret/R/probFunction.R
caret/R/resampleHist.R
caret/R/resampleSummary.R
caret/R/resampleWrapper.R
caret/R/resamples.R
caret/R/rfe.R
caret/R/roc.R
caret/R/rocPoint.R
caret/R/sampling.R
caret/R/selectByFilter.R
caret/R/selection.R
caret/R/sensitivity.R
caret/R/sortImp.R
caret/R/spatialSign.R
caret/R/specificty.R
caret/R/splsda.R
caret/R/suggestions.R
caret/R/train.default.R
caret/R/trainControl.R
caret/R/twoClassSim.R
caret/R/updates.R
caret/R/varImp.R
caret/R/varImp.train.R
caret/R/workflows.R
caret/data
caret/data/BloodBrain.RData
caret/data/GermanCredit.RData
caret/data/cars.RData
caret/data/cox2.RData
caret/data/datalist
caret/data/dhfr.RData
caret/data/mdrr.RData
caret/data/oil.RData
caret/data/pottery.RData
caret/data/segmentationData.RData
caret/data/tecator.RData
caret/inst
caret/inst/NEWS.Rd
caret/inst/models
caret/inst/models/models.RData
caret/man
caret/man/BloodBrain.Rd
caret/man/BoxCoxTrans.Rd
caret/man/GermanCredit.Rd
caret/man/as.table.confusionMatrix.Rd
caret/man/avNNet.Rd
caret/man/bag.Rd
caret/man/bagEarth.Rd
caret/man/bagFDA.Rd
caret/man/calibration.Rd
caret/man/caret-internal.Rd
caret/man/cars.Rd
caret/man/classDist.Rd
caret/man/confusionMatrix.Rd
caret/man/confusionMatrix.train.Rd
caret/man/cox2.Rd
caret/man/createDataPartition.Rd
caret/man/dhfr.Rd
caret/man/diff.resamples.Rd
caret/man/dotplot.varImp.train.Rd
caret/man/downSample.Rd
caret/man/dummyVars.Rd
caret/man/extractPrediction.Rd
caret/man/featurePlot.Rd
caret/man/filterVarImp.Rd
caret/man/findCorrelation.Rd
caret/man/findLinearCombos.Rd
caret/man/format.bagEarth.Rd
caret/man/generateExprVal.method.trimMean.Rd
caret/man/icr.Rd
caret/man/knn3.Rd
caret/man/knnreg.Rd
caret/man/lattice.Rd
caret/man/lattice.diff.resamples.Rd
caret/man/lattice.resamples.Rd
caret/man/lattice.rfe.Rd
caret/man/lift.Rd
caret/man/maxDissim.Rd
caret/man/mdrr.Rd
caret/man/modelLookup.Rd
caret/man/models.Rd
caret/man/nearZeroVar.Rd
caret/man/normalize.AffyBatch.normalize2Reference.Rd
caret/man/normalize2Reference.Rd
caret/man/nullModel.Rd
caret/man/oil.Rd
caret/man/panel.lift.Rd
caret/man/panel.needle.Rd
caret/man/pcaNNet.Rd
caret/man/plot.rfe.Rd
caret/man/plot.train.Rd
caret/man/plot.varImp.train.Rd
caret/man/plotClassProbs.Rd
caret/man/plotObsVsPred.Rd
caret/man/plsda.Rd
caret/man/postResample.Rd
caret/man/pottery.Rd
caret/man/prcomp.resamples.Rd
caret/man/preProcess.Rd
caret/man/predict.bagEarth.Rd
caret/man/predict.knn3.Rd
caret/man/predict.knnreg.Rd
caret/man/predictors.Rd
caret/man/print.confusionMatrix.Rd
caret/man/print.train.Rd
caret/man/resampleHist.Rd
caret/man/resampleSummary.Rd
caret/man/resamples.Rd
caret/man/rfe.Rd
caret/man/rfeControl.Rd
caret/man/rfeFunctions.Rd
caret/man/sbf.Rd
caret/man/sbfControl.Rd
caret/man/sbfFunctions.Rd
caret/man/segmentationData.Rd
caret/man/selection.Rd
caret/man/sensitivity.Rd
caret/man/spatialSign.Rd
caret/man/summary.bagEarth.Rd
caret/man/tecator.Rd
caret/man/train.Rd
caret/man/trainControl.Rd
caret/man/twoClassSim.Rd
caret/man/update.train.Rd
caret/man/varImp.Rd
caret/src
caret/src/caret.c
caret/vignettes
caret/vignettes/caret.Rnw
caret/vignettes/caret.pdf