extractPrediction: Extract predictions and class probabilities from train...
In caret: Classification and Regression Training

Description Usage Arguments Details Value Author(s) References See Also Examples

These functions can be used for a single train object or to loop through a number of train objects to calculate the training and test data predictions and class probabilities.

## S3 method for class 'list'
predict(object, ...)

## S3 method for class 'train'
predict(object, newdata = NULL, type = "raw", na.action = na.omit, ...)

extractPrediction(models,
                  testX = NULL, testY = NULL,
                  unkX = NULL, 
                  unkOnly = !is.null(unkX) & is.null(testX),
                  verbose = FALSE)

extractProb(models,
            testX = NULL,  testY = NULL,
            unkX = NULL, 
            unkOnly = !is.null(unkX) & is.null(testX),
            verbose = FALSE)

`object`	For `predict.train`, an object of class `train`. For `predict.list`, a list of objects of class `train`.
`newdata`	an optional set of data to predict on. If `NULL`, then the original training data are used
`type`	either "raw" or "prob", for the number/class predictions or class probabilities, respectively. Class probabilities are not available for all classification models
`models`	a list of objects of the class `train`. The objects must have been generated with `fitBest = FALSE` and `returnData = TRUE`.
`na.action`	the method for handling missing data
`testX`	an optional set of data to predict
`testY`	an optional outcome corresponding to the data given in `testX`
`unkX`	another optional set of data to predict without known outcomes
`unkOnly`	a logical to bypass training and test set predictions. This is useful if speed is needed for unknown samples.
`verbose`	a logical for printing messages
`...`	additional arguments to be passed to other methods

These functions are wrappers for the specific prediction functions in each modeling package. In each case, the optimal tuning values given in the tuneValue slot of the finalModel object are used to predict.

To get simple predictions for a new data set, the predict function can be used. Limits can be imposed on the range of predictions. See trainControl for more information.

To get predictions for a series of models at once, a list of train objects can be passes to the predict function and a list of model predictions will be returned.

The two extraction functions can be used to get the predictions and observed outcomes at once for the training, test and/or unknown samples at once in a single data frame (instead of a list of just the predictions). These objects can then be passes to plotObsVsPred or plotClassProbs.

For predict.train, a vector of predictions if type = "raw" or a data frame of class probabilities for type = "probs". In the latter case, there are columns for each class.

For predict.list, a list results. Each element is produced by predict.train.

For extractPrediction, a data frame with columns:

`obs`	the observed training and test data
`pred`	predicted values
`model`	the type of model used to predict
`object`	the names of the objects within `models`. If `models` is an un-named list, the values of `object` will be "Object1", "Object2" and so on
`dataType`	"Training", "Test" or "Unknown" depending on what was specified

For extractProb, a data frame. There is a column for each class containing the probabilities. The remaining columns are the same as above (although the pred column is the predicted class)

Max Kuhn

Kuhn (2008), “Building Predictive Models in R Using the caret” (http://www.jstatsoft.org/v28/i05/)

plotObsVsPred, plotClassProbs, trainControl

   ## Not run: 

knnFit <- train(Species ~ ., data = iris, method = "knn", 
                trControl = trainControl(method = "cv"))

rdaFit <- train(Species ~ ., data = iris, method = "rda", 
                trControl = trainControl(method = "cv"))

predict(knnFit)
predict(knnFit, type = "prob")

bothModels <- list(knn = knnFit,
                   tree = rdaFit)

predict(bothModels)

extractPrediction(bothModels, testX = iris[1:10, -5])
extractProb(bothModels, testX = iris[1:10, -5])
  
## End(Not run)

Loading required package: lattice
Loading required package: ggplot2
Loading required package: klaR
Loading required package: MASS
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  [7] setosa     setosa     setosa     setosa     setosa     setosa    
 [13] setosa     setosa     setosa     setosa     setosa     setosa    
 [19] setosa     setosa     setosa     setosa     setosa     setosa    
 [25] setosa     setosa     setosa     setosa     setosa     setosa    
 [31] setosa     setosa     setosa     setosa     setosa     setosa    
 [37] setosa     setosa     setosa     setosa     setosa     setosa    
 [43] setosa     setosa     setosa     setosa     setosa     setosa    
 [49] setosa     setosa     versicolor versicolor versicolor versicolor
 [55] versicolor versicolor versicolor versicolor versicolor versicolor
 [61] versicolor versicolor versicolor versicolor versicolor versicolor
 [67] versicolor versicolor versicolor versicolor versicolor versicolor
 [73] virginica  versicolor versicolor versicolor versicolor versicolor
 [79] versicolor versicolor versicolor versicolor versicolor virginica 
 [85] versicolor versicolor versicolor versicolor versicolor versicolor
 [91] versicolor versicolor versicolor versicolor versicolor versicolor
 [97] versicolor versicolor versicolor versicolor virginica  virginica 
[103] virginica  virginica  virginica  virginica  versicolor virginica 
[109] virginica  virginica  virginica  virginica  virginica  virginica 
[115] virginica  virginica  virginica  virginica  virginica  virginica 
[121] virginica  virginica  virginica  virginica  virginica  virginica 
[127] virginica  virginica  virginica  virginica  virginica  virginica 
[133] virginica  virginica  virginica  virginica  virginica  virginica 
[139] virginica  virginica  virginica  virginica  virginica  virginica 
[145] virginica  virginica  virginica  virginica  virginica  virginica 
Levels: setosa versicolor virginica
    setosa versicolor  virginica
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3        1  0.0000000 0.00000000
4        1  0.0000000 0.00000000
5        1  0.0000000 0.00000000
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7        1  0.0000000 0.00000000
8        1  0.0000000 0.00000000
9        1  0.0000000 0.00000000
10       1  0.0000000 0.00000000
11       1  0.0000000 0.00000000
12       1  0.0000000 0.00000000
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19       1  0.0000000 0.00000000
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21       1  0.0000000 0.00000000
22       1  0.0000000 0.00000000
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24       1  0.0000000 0.00000000
25       1  0.0000000 0.00000000
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27       1  0.0000000 0.00000000
28       1  0.0000000 0.00000000
29       1  0.0000000 0.00000000
30       1  0.0000000 0.00000000
31       1  0.0000000 0.00000000
32       1  0.0000000 0.00000000
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35       1  0.0000000 0.00000000
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48       1  0.0000000 0.00000000
49       1  0.0000000 0.00000000
50       1  0.0000000 0.00000000
51       0  1.0000000 0.00000000
52       0  1.0000000 0.00000000
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55       0  1.0000000 0.00000000
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59       0  1.0000000 0.00000000
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70       0  1.0000000 0.00000000
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72       0  1.0000000 0.00000000
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74       0  1.0000000 0.00000000
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85       0  1.0000000 0.00000000
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87       0  1.0000000 0.00000000
88       0  1.0000000 0.00000000
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90       0  1.0000000 0.00000000
91       0  1.0000000 0.00000000
92       0  0.9090909 0.09090909
93       0  1.0000000 0.00000000
94       0  1.0000000 0.00000000
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103      0  0.0000000 1.00000000
104      0  0.0000000 1.00000000
105      0  0.0000000 1.00000000
106      0  0.0000000 1.00000000
107      0  0.7777778 0.22222222
108      0  0.0000000 1.00000000
109      0  0.0000000 1.00000000
110      0  0.0000000 1.00000000
111      0  0.1111111 0.88888889
112      0  0.0000000 1.00000000
113      0  0.0000000 1.00000000
114      0  0.1000000 0.90000000
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116      0  0.0000000 1.00000000
117      0  0.0000000 1.00000000
118      0  0.0000000 1.00000000
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122      0  0.1111111 0.88888889
123      0  0.0000000 1.00000000
124      0  0.2222222 0.77777778
125      0  0.0000000 1.00000000
126      0  0.0000000 1.00000000
127      0  0.3333333 0.66666667
128      0  0.4000000 0.60000000
129      0  0.0000000 1.00000000
130      0  0.0000000 1.00000000
131      0  0.0000000 1.00000000
132      0  0.0000000 1.00000000
133      0  0.0000000 1.00000000
134      0  0.4444444 0.55555556
135      0  0.2222222 0.77777778
136      0  0.0000000 1.00000000
137      0  0.0000000 1.00000000
138      0  0.0000000 1.00000000
139      0  0.4444444 0.55555556
140      0  0.0000000 1.00000000
141      0  0.0000000 1.00000000
142      0  0.0000000 1.00000000
143      0  0.1111111 0.88888889
144      0  0.0000000 1.00000000
145      0  0.0000000 1.00000000
146      0  0.0000000 1.00000000
147      0  0.2222222 0.77777778
148      0  0.1111111 0.88888889
149      0  0.0000000 1.00000000
150      0  0.2222222 0.77777778
$knn
  [1] setosa     setosa     setosa     setosa     setosa     setosa    
  [7] setosa     setosa     setosa     setosa     setosa     setosa    
 [13] setosa     setosa     setosa     setosa     setosa     setosa    
 [19] setosa     setosa     setosa     setosa     setosa     setosa    
 [25] setosa     setosa     setosa     setosa     setosa     setosa    
 [31] setosa     setosa     setosa     setosa     setosa     setosa    
 [37] setosa     setosa     setosa     setosa     setosa     setosa    
 [43] setosa     setosa     setosa     setosa     setosa     setosa    
 [49] setosa     setosa     versicolor versicolor versicolor versicolor
 [55] versicolor versicolor versicolor versicolor versicolor versicolor
 [61] versicolor versicolor versicolor versicolor versicolor versicolor
 [67] versicolor versicolor versicolor versicolor versicolor versicolor
 [73] virginica  versicolor versicolor versicolor versicolor versicolor
 [79] versicolor versicolor versicolor versicolor versicolor virginica 
 [85] versicolor versicolor versicolor versicolor versicolor versicolor
 [91] versicolor versicolor versicolor versicolor versicolor versicolor
 [97] versicolor versicolor versicolor versicolor virginica  virginica 
[103] virginica  virginica  virginica  virginica  versicolor virginica 
[109] virginica  virginica  virginica  virginica  virginica  virginica 
[115] virginica  virginica  virginica  virginica  virginica  virginica 
[121] virginica  virginica  virginica  virginica  virginica  virginica 
[127] virginica  virginica  virginica  virginica  virginica  virginica 
[133] virginica  virginica  virginica  virginica  virginica  virginica 
[139] virginica  virginica  virginica  virginica  virginica  virginica 
[145] virginica  virginica  virginica  virginica  virginica  virginica 
Levels: setosa versicolor virginica

$tree
  [1] setosa     setosa     setosa     setosa     setosa     setosa    
  [7] setosa     setosa     setosa     setosa     setosa     setosa    
 [13] setosa     setosa     setosa     setosa     setosa     setosa    
 [19] setosa     setosa     setosa     setosa     setosa     setosa    
 [25] setosa     setosa     setosa     setosa     setosa     setosa    
 [31] setosa     setosa     setosa     setosa     setosa     setosa    
 [37] setosa     setosa     setosa     setosa     setosa     setosa    
 [43] setosa     setosa     setosa     setosa     setosa     setosa    
 [49] setosa     setosa     versicolor versicolor versicolor versicolor
 [55] versicolor versicolor versicolor versicolor versicolor versicolor
 [61] versicolor versicolor versicolor versicolor versicolor versicolor
 [67] versicolor versicolor versicolor versicolor virginica  versicolor
 [73] versicolor versicolor versicolor versicolor versicolor versicolor
 [79] versicolor versicolor versicolor versicolor versicolor virginica 
 [85] versicolor versicolor versicolor versicolor versicolor versicolor
 [91] versicolor versicolor versicolor versicolor versicolor versicolor
 [97] versicolor versicolor versicolor versicolor virginica  virginica 
[103] virginica  virginica  virginica  virginica  virginica  virginica 
[109] virginica  virginica  virginica  virginica  virginica  virginica 
[115] virginica  virginica  virginica  virginica  virginica  virginica 
[121] virginica  virginica  virginica  virginica  virginica  virginica 
[127] virginica  virginica  virginica  virginica  virginica  virginica 
[133] virginica  versicolor virginica  virginica  virginica  virginica 
[139] virginica  virginica  virginica  virginica  virginica  virginica 
[145] virginica  virginica  virginica  virginica  virginica  virginica 
Levels: setosa versicolor virginica

           obs       pred model dataType object
1       setosa     setosa   knn Training    knn
2       setosa     setosa   knn Training    knn
3       setosa     setosa   knn Training    knn
4       setosa     setosa   knn Training    knn
5       setosa     setosa   knn Training    knn
6       setosa     setosa   knn Training    knn
7       setosa     setosa   knn Training    knn
8       setosa     setosa   knn Training    knn
9       setosa     setosa   knn Training    knn
10      setosa     setosa   knn Training    knn
11      setosa     setosa   knn Training    knn
12      setosa     setosa   knn Training    knn
13      setosa     setosa   knn Training    knn
14      setosa     setosa   knn Training    knn
15      setosa     setosa   knn Training    knn
16      setosa     setosa   knn Training    knn
17      setosa     setosa   knn Training    knn
18      setosa     setosa   knn Training    knn
19      setosa     setosa   knn Training    knn
20      setosa     setosa   knn Training    knn
21      setosa     setosa   knn Training    knn
22      setosa     setosa   knn Training    knn
23      setosa     setosa   knn Training    knn
24      setosa     setosa   knn Training    knn
25      setosa     setosa   knn Training    knn
26      setosa     setosa   knn Training    knn
27      setosa     setosa   knn Training    knn
28      setosa     setosa   knn Training    knn
29      setosa     setosa   knn Training    knn
30      setosa     setosa   knn Training    knn
31      setosa     setosa   knn Training    knn
32      setosa     setosa   knn Training    knn
33      setosa     setosa   knn Training    knn
34      setosa     setosa   knn Training    knn
35      setosa     setosa   knn Training    knn
36      setosa     setosa   knn Training    knn
37      setosa     setosa   knn Training    knn
38      setosa     setosa   knn Training    knn
39      setosa     setosa   knn Training    knn
40      setosa     setosa   knn Training    knn
41      setosa     setosa   knn Training    knn
42      setosa     setosa   knn Training    knn
43      setosa     setosa   knn Training    knn
44      setosa     setosa   knn Training    knn
45      setosa     setosa   knn Training    knn
46      setosa     setosa   knn Training    knn
47      setosa     setosa   knn Training    knn
48      setosa     setosa   knn Training    knn
49      setosa     setosa   knn Training    knn
50      setosa     setosa   knn Training    knn
51  versicolor versicolor   knn Training    knn
52  versicolor versicolor   knn Training    knn
53  versicolor versicolor   knn Training    knn
54  versicolor versicolor   knn Training    knn
55  versicolor versicolor   knn Training    knn
56  versicolor versicolor   knn Training    knn
57  versicolor versicolor   knn Training    knn
58  versicolor versicolor   knn Training    knn
59  versicolor versicolor   knn Training    knn
60  versicolor versicolor   knn Training    knn
61  versicolor versicolor   knn Training    knn
62  versicolor versicolor   knn Training    knn
63  versicolor versicolor   knn Training    knn
64  versicolor versicolor   knn Training    knn
65  versicolor versicolor   knn Training    knn
66  versicolor versicolor   knn Training    knn
67  versicolor versicolor   knn Training    knn
68  versicolor versicolor   knn Training    knn
69  versicolor versicolor   knn Training    knn
70  versicolor versicolor   knn Training    knn
71  versicolor versicolor   knn Training    knn
72  versicolor versicolor   knn Training    knn
73  versicolor  virginica   knn Training    knn
74  versicolor versicolor   knn Training    knn
75  versicolor versicolor   knn Training    knn
76  versicolor versicolor   knn Training    knn
77  versicolor versicolor   knn Training    knn
78  versicolor versicolor   knn Training    knn
79  versicolor versicolor   knn Training    knn
80  versicolor versicolor   knn Training    knn
81  versicolor versicolor   knn Training    knn
82  versicolor versicolor   knn Training    knn
83  versicolor versicolor   knn Training    knn
84  versicolor  virginica   knn Training    knn
85  versicolor versicolor   knn Training    knn
86  versicolor versicolor   knn Training    knn
87  versicolor versicolor   knn Training    knn
88  versicolor versicolor   knn Training    knn
89  versicolor versicolor   knn Training    knn
90  versicolor versicolor   knn Training    knn
91  versicolor versicolor   knn Training    knn
92  versicolor versicolor   knn Training    knn
93  versicolor versicolor   knn Training    knn
94  versicolor versicolor   knn Training    knn
95  versicolor versicolor   knn Training    knn
96  versicolor versicolor   knn Training    knn
97  versicolor versicolor   knn Training    knn
98  versicolor versicolor   knn Training    knn
99  versicolor versicolor   knn Training    knn
100 versicolor versicolor   knn Training    knn
101  virginica  virginica   knn Training    knn
102  virginica  virginica   knn Training    knn
103  virginica  virginica   knn Training    knn
104  virginica  virginica   knn Training    knn
105  virginica  virginica   knn Training    knn
106  virginica  virginica   knn Training    knn
107  virginica versicolor   knn Training    knn
108  virginica  virginica   knn Training    knn
109  virginica  virginica   knn Training    knn
110  virginica  virginica   knn Training    knn
111  virginica  virginica   knn Training    knn
112  virginica  virginica   knn Training    knn
113  virginica  virginica   knn Training    knn
114  virginica  virginica   knn Training    knn
115  virginica  virginica   knn Training    knn
116  virginica  virginica   knn Training    knn
117  virginica  virginica   knn Training    knn
118  virginica  virginica   knn Training    knn
119  virginica  virginica   knn Training    knn
120  virginica  virginica   knn Training    knn
121  virginica  virginica   knn Training    knn
122  virginica  virginica   knn Training    knn
123  virginica  virginica   knn Training    knn
124  virginica  virginica   knn Training    knn
125  virginica  virginica   knn Training    knn
126  virginica  virginica   knn Training    knn
127  virginica  virginica   knn Training    knn
128  virginica  virginica   knn Training    knn
129  virginica  virginica   knn Training    knn
130  virginica  virginica   knn Training    knn
131  virginica  virginica   knn Training    knn
132  virginica  virginica   knn Training    knn
133  virginica  virginica   knn Training    knn
134  virginica  virginica   knn Training    knn
135  virginica  virginica   knn Training    knn
136  virginica  virginica   knn Training    knn
137  virginica  virginica   knn Training    knn
138  virginica  virginica   knn Training    knn
139  virginica  virginica   knn Training    knn
140  virginica  virginica   knn Training    knn
141  virginica  virginica   knn Training    knn
142  virginica  virginica   knn Training    knn
143  virginica  virginica   knn Training    knn
144  virginica  virginica   knn Training    knn
145  virginica  virginica   knn Training    knn
146  virginica  virginica   knn Training    knn
147  virginica  virginica   knn Training    knn
148  virginica  virginica   knn Training    knn
149  virginica  virginica   knn Training    knn
150  virginica  virginica   knn Training    knn
151     setosa     setosa   rda Training   tree
152     setosa     setosa   rda Training   tree
153     setosa     setosa   rda Training   tree
154     setosa     setosa   rda Training   tree
155     setosa     setosa   rda Training   tree
156     setosa     setosa   rda Training   tree
157     setosa     setosa   rda Training   tree
158     setosa     setosa   rda Training   tree
159     setosa     setosa   rda Training   tree
160     setosa     setosa   rda Training   tree
161     setosa     setosa   rda Training   tree
162     setosa     setosa   rda Training   tree
163     setosa     setosa   rda Training   tree
164     setosa     setosa   rda Training   tree
165     setosa     setosa   rda Training   tree
166     setosa     setosa   rda Training   tree
167     setosa     setosa   rda Training   tree
168     setosa     setosa   rda Training   tree
169     setosa     setosa   rda Training   tree
170     setosa     setosa   rda Training   tree
171     setosa     setosa   rda Training   tree
172     setosa     setosa   rda Training   tree
173     setosa     setosa   rda Training   tree
174     setosa     setosa   rda Training   tree
175     setosa     setosa   rda Training   tree
176     setosa     setosa   rda Training   tree
177     setosa     setosa   rda Training   tree
178     setosa     setosa   rda Training   tree
179     setosa     setosa   rda Training   tree
180     setosa     setosa   rda Training   tree
181     setosa     setosa   rda Training   tree
182     setosa     setosa   rda Training   tree
183     setosa     setosa   rda Training   tree
184     setosa     setosa   rda Training   tree
185     setosa     setosa   rda Training   tree
186     setosa     setosa   rda Training   tree
187     setosa     setosa   rda Training   tree
188     setosa     setosa   rda Training   tree
189     setosa     setosa   rda Training   tree
190     setosa     setosa   rda Training   tree
191     setosa     setosa   rda Training   tree
192     setosa     setosa   rda Training   tree
193     setosa     setosa   rda Training   tree
194     setosa     setosa   rda Training   tree
195     setosa     setosa   rda Training   tree
196     setosa     setosa   rda Training   tree
197     setosa     setosa   rda Training   tree
198     setosa     setosa   rda Training   tree
199     setosa     setosa   rda Training   tree
200     setosa     setosa   rda Training   tree
201 versicolor versicolor   rda Training   tree
202 versicolor versicolor   rda Training   tree
203 versicolor versicolor   rda Training   tree
204 versicolor versicolor   rda Training   tree
205 versicolor versicolor   rda Training   tree
206 versicolor versicolor   rda Training   tree
207 versicolor versicolor   rda Training   tree
208 versicolor versicolor   rda Training   tree
209 versicolor versicolor   rda Training   tree
210 versicolor versicolor   rda Training   tree
211 versicolor versicolor   rda Training   tree
212 versicolor versicolor   rda Training   tree
213 versicolor versicolor   rda Training   tree
214 versicolor versicolor   rda Training   tree
215 versicolor versicolor   rda Training   tree
216 versicolor versicolor   rda Training   tree
217 versicolor versicolor   rda Training   tree
218 versicolor versicolor   rda Training   tree
219 versicolor versicolor   rda Training   tree
220 versicolor versicolor   rda Training   tree
221 versicolor  virginica   rda Training   tree
222 versicolor versicolor   rda Training   tree
223 versicolor versicolor   rda Training   tree
224 versicolor versicolor   rda Training   tree
225 versicolor versicolor   rda Training   tree
226 versicolor versicolor   rda Training   tree
227 versicolor versicolor   rda Training   tree
228 versicolor versicolor   rda Training   tree
229 versicolor versicolor   rda Training   tree
230 versicolor versicolor   rda Training   tree
231 versicolor versicolor   rda Training   tree
232 versicolor versicolor   rda Training   tree
233 versicolor versicolor   rda Training   tree
234 versicolor  virginica   rda Training   tree
235 versicolor versicolor   rda Training   tree
236 versicolor versicolor   rda Training   tree
237 versicolor versicolor   rda Training   tree
238 versicolor versicolor   rda Training   tree
239 versicolor versicolor   rda Training   tree
240 versicolor versicolor   rda Training   tree
241 versicolor versicolor   rda Training   tree
242 versicolor versicolor   rda Training   tree
243 versicolor versicolor   rda Training   tree
244 versicolor versicolor   rda Training   tree
245 versicolor versicolor   rda Training   tree
246 versicolor versicolor   rda Training   tree
247 versicolor versicolor   rda Training   tree
248 versicolor versicolor   rda Training   tree
249 versicolor versicolor   rda Training   tree
250 versicolor versicolor   rda Training   tree
251  virginica  virginica   rda Training   tree
252  virginica  virginica   rda Training   tree
253  virginica  virginica   rda Training   tree
254  virginica  virginica   rda Training   tree
255  virginica  virginica   rda Training   tree
256  virginica  virginica   rda Training   tree
257  virginica  virginica   rda Training   tree
258  virginica  virginica   rda Training   tree
259  virginica  virginica   rda Training   tree
260  virginica  virginica   rda Training   tree
261  virginica  virginica   rda Training   tree
262  virginica  virginica   rda Training   tree
263  virginica  virginica   rda Training   tree
264  virginica  virginica   rda Training   tree
265  virginica  virginica   rda Training   tree
266  virginica  virginica   rda Training   tree
267  virginica  virginica   rda Training   tree
268  virginica  virginica   rda Training   tree
269  virginica  virginica   rda Training   tree
270  virginica  virginica   rda Training   tree
271  virginica  virginica   rda Training   tree
272  virginica  virginica   rda Training   tree
273  virginica  virginica   rda Training   tree
274  virginica  virginica   rda Training   tree
275  virginica  virginica   rda Training   tree
276  virginica  virginica   rda Training   tree
277  virginica  virginica   rda Training   tree
278  virginica  virginica   rda Training   tree
279  virginica  virginica   rda Training   tree
280  virginica  virginica   rda Training   tree
281  virginica  virginica   rda Training   tree
282  virginica  virginica   rda Training   tree
283  virginica  virginica   rda Training   tree
284  virginica versicolor   rda Training   tree
285  virginica  virginica   rda Training   tree
286  virginica  virginica   rda Training   tree
287  virginica  virginica   rda Training   tree
288  virginica  virginica   rda Training   tree
289  virginica  virginica   rda Training   tree
290  virginica  virginica   rda Training   tree
291  virginica  virginica   rda Training   tree
292  virginica  virginica   rda Training   tree
293  virginica  virginica   rda Training   tree
294  virginica  virginica   rda Training   tree
295  virginica  virginica   rda Training   tree
296  virginica  virginica   rda Training   tree
297  virginica  virginica   rda Training   tree
298  virginica  virginica   rda Training   tree
299  virginica  virginica   rda Training   tree
300  virginica  virginica   rda Training   tree
          setosa   versicolor    virginica        obs       pred model dataType
1   1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
2   1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
3   1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
4   1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
5   1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
6   1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
7   1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
8   1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
9   1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
10  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
11  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
12  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
13  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
14  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
15  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
16  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
17  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
18  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
19  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
20  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
21  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
22  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
23  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
24  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
25  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
26  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
27  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
28  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
29  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
30  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
31  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
32  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
33  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
34  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
35  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
36  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
37  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
38  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
39  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
40  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
41  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
42  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
43  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
44  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
45  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
46  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
47  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
48  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
49  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
50  1.000000e+00 0.000000e+00 0.000000e+00     setosa     setosa   knn Training
51  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
52  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
53  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
54  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
55  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
56  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
57  0.000000e+00 7.777778e-01 2.222222e-01 versicolor versicolor   knn Training
58  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
59  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
60  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
61  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
62  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
63  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
64  0.000000e+00 6.666667e-01 3.333333e-01 versicolor versicolor   knn Training
65  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
66  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
67  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
68  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
69  0.000000e+00 6.666667e-01 3.333333e-01 versicolor versicolor   knn Training
70  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
71  0.000000e+00 5.555556e-01 4.444444e-01 versicolor versicolor   knn Training
72  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
73  0.000000e+00 4.444444e-01 5.555556e-01 versicolor  virginica   knn Training
74  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
75  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
76  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
77  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
78  0.000000e+00 5.555556e-01 4.444444e-01 versicolor versicolor   knn Training
79  0.000000e+00 8.888889e-01 1.111111e-01 versicolor versicolor   knn Training
80  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
81  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
82  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
83  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
84  0.000000e+00 2.222222e-01 7.777778e-01 versicolor  virginica   knn Training
85  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
86  0.000000e+00 8.888889e-01 1.111111e-01 versicolor versicolor   knn Training
87  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
88  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
89  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
90  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
91  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
92  0.000000e+00 9.090909e-01 9.090909e-02 versicolor versicolor   knn Training
93  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
94  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
95  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
96  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
97  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
98  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
99  0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
100 0.000000e+00 1.000000e+00 0.000000e+00 versicolor versicolor   knn Training
101 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
102 0.000000e+00 1.111111e-01 8.888889e-01  virginica  virginica   knn Training
103 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
104 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
105 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
106 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
107 0.000000e+00 7.777778e-01 2.222222e-01  virginica versicolor   knn Training
108 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
109 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
110 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
111 0.000000e+00 1.111111e-01 8.888889e-01  virginica  virginica   knn Training
112 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
113 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
114 0.000000e+00 1.000000e-01 9.000000e-01  virginica  virginica   knn Training
115 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
116 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
117 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
118 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
119 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
120 0.000000e+00 3.000000e-01 7.000000e-01  virginica  virginica   knn Training
121 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
122 0.000000e+00 1.111111e-01 8.888889e-01  virginica  virginica   knn Training
123 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
124 0.000000e+00 2.222222e-01 7.777778e-01  virginica  virginica   knn Training
125 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
126 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
127 0.000000e+00 3.333333e-01 6.666667e-01  virginica  virginica   knn Training
128 0.000000e+00 4.000000e-01 6.000000e-01  virginica  virginica   knn Training
129 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
130 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
131 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
132 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
133 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
134 0.000000e+00 4.444444e-01 5.555556e-01  virginica  virginica   knn Training
135 0.000000e+00 2.222222e-01 7.777778e-01  virginica  virginica   knn Training
136 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
137 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
138 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
139 0.000000e+00 4.444444e-01 5.555556e-01  virginica  virginica   knn Training
140 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
141 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
142 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
143 0.000000e+00 1.111111e-01 8.888889e-01  virginica  virginica   knn Training
144 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
145 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
146 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
147 0.000000e+00 2.222222e-01 7.777778e-01  virginica  virginica   knn Training
148 0.000000e+00 1.111111e-01 8.888889e-01  virginica  virginica   knn Training
149 0.000000e+00 0.000000e+00 1.000000e+00  virginica  virginica   knn Training
150 0.000000e+00 2.222222e-01 7.777778e-01  virginica  virginica   knn Training
151 1.000000e+00 3.896358e-22 2.611168e-42     setosa     setosa   rda Training
152 1.000000e+00 7.217970e-18 5.042143e-37     setosa     setosa   rda Training
153 1.000000e+00 1.463849e-19 4.675932e-39     setosa     setosa   rda Training
154 1.000000e+00 1.268536e-16 3.566610e-35     setosa     setosa   rda Training
155 1.000000e+00 1.637387e-22 1.082605e-42     setosa     setosa   rda Training
156 1.000000e+00 3.883282e-21 4.566540e-40     setosa     setosa   rda Training
157 1.000000e+00 1.113469e-18 2.302608e-37     setosa     setosa   rda Training
158 1.000000e+00 3.877586e-20 1.074496e-39     setosa     setosa   rda Training
159 1.000000e+00 1.902813e-15 9.482936e-34     setosa     setosa   rda Training
160 1.000000e+00 1.111803e-18 2.724060e-38     setosa     setosa   rda Training
161 1.000000e+00 1.185277e-23 3.237084e-44     setosa     setosa   rda Training
162 1.000000e+00 1.621649e-18 1.833201e-37     setosa     setosa   rda Training
163 1.000000e+00 1.459225e-18 3.262506e-38     setosa     setosa   rda Training
164 1.000000e+00 1.117219e-19 1.316642e-39     setosa     setosa   rda Training
165 1.000000e+00 5.487399e-30 1.531265e-52     setosa     setosa   rda Training
166 1.000000e+00 1.261505e-27 2.268705e-48     setosa     setosa   rda Training
167 1.000000e+00 6.754338e-25 3.868271e-45     setosa     setosa   rda Training
168 1.000000e+00 4.223741e-21 1.224313e-40     setosa     setosa   rda Training
169 1.000000e+00 1.774911e-22 2.552153e-42     setosa     setosa   rda Training
170 1.000000e+00 2.593237e-22 5.792079e-42     setosa     setosa   rda Training
171 1.000000e+00 1.274639e-19 4.357774e-39     setosa     setosa   rda Training
172 1.000000e+00 1.465999e-20 1.987241e-39     setosa     setosa   rda Training
173 1.000000e+00 6.569280e-25 7.769177e-46     setosa     setosa   rda Training
174 1.000000e+00 8.912348e-15 9.178624e-32     setosa     setosa   rda Training
175 1.000000e+00 1.070702e-15 1.167516e-33     setosa     setosa   rda Training
176 1.000000e+00 2.497339e-16 5.710269e-35     setosa     setosa   rda Training
177 1.000000e+00 3.967732e-17 4.378624e-35     setosa     setosa   rda Training
178 1.000000e+00 1.548165e-21 1.595360e-41     setosa     setosa   rda Training
179 1.000000e+00 9.271847e-22 6.297955e-42     setosa     setosa   rda Training
180 1.000000e+00 9.665144e-17 2.977974e-35     setosa     setosa   rda Training
181 1.000000e+00 2.299936e-16 7.182666e-35     setosa     setosa   rda Training
182 1.000000e+00 1.975404e-19 2.788334e-38     setosa     setosa   rda Training
183 1.000000e+00 7.100041e-27 2.216408e-48     setosa     setosa   rda Training
184 1.000000e+00 1.610295e-28 2.743783e-50     setosa     setosa   rda Training
185 1.000000e+00 1.205219e-17 1.277245e-36     setosa     setosa   rda Training
186 1.000000e+00 1.597186e-21 9.033772e-42     setosa     setosa   rda Training
187 1.000000e+00 1.939869e-24 1.662808e-45     setosa     setosa   rda Training
188 1.000000e+00 3.310234e-23 7.004971e-44     setosa     setosa   rda Training
189 1.000000e+00 4.190242e-17 6.991441e-36     setosa     setosa   rda Training
190 1.000000e+00 1.769359e-20 3.541694e-40     setosa     setosa   rda Training
191 1.000000e+00 1.063014e-21 2.003866e-41     setosa     setosa   rda Training
192 1.000000e+00 2.174217e-11 1.213781e-28     setosa     setosa   rda Training
193 1.000000e+00 1.540753e-18 1.305719e-37     setosa     setosa   rda Training
194 1.000000e+00 8.940589e-16 1.315511e-32     setosa     setosa   rda Training
195 1.000000e+00 1.616206e-17 3.205992e-35     setosa     setosa   rda Training
196 1.000000e+00 1.714743e-16 7.172435e-35     setosa     setosa   rda Training
197 1.000000e+00 2.083089e-22 2.289783e-42     setosa     setosa   rda Training
198 1.000000e+00 2.793482e-18 2.629539e-37     setosa     setosa   rda Training
199 1.000000e+00 2.597560e-23 9.820820e-44     setosa     setosa   rda Training
200 1.000000e+00 2.322258e-20 4.241757e-40     setosa     setosa   rda Training
201 1.969732e-18 9.998894e-01 1.105878e-04 versicolor versicolor   rda Training
202 1.242878e-19 9.992575e-01 7.425297e-04 versicolor versicolor   rda Training
203 2.088263e-22 9.958069e-01 4.193053e-03 versicolor versicolor   rda Training
204 2.198898e-22 9.996423e-01 3.576502e-04 versicolor versicolor   rda Training
205 4.213678e-23 9.955903e-01 4.409655e-03 versicolor versicolor   rda Training
206 8.127287e-23 9.985020e-01 1.497982e-03 versicolor versicolor   rda Training
207 3.549900e-22 9.858346e-01 1.416542e-02 versicolor versicolor   rda Training
208 5.007065e-14 9.999999e-01 1.119811e-07 versicolor versicolor   rda Training
209 5.683334e-20 9.998781e-01 1.218649e-04 versicolor versicolor   rda Training
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caret documentation built on May 2, 2019, 5:47 p.m.

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Classification and Regression Training

extractPrediction: Extract predictions and class probabilities from train...
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caret Classification and Regression Training

extractPrediction: Extract predictions and class probabilities from train... In caret: Classification and Regression Training

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caret
Classification and Regression Training

extractPrediction: Extract predictions and class probabilities from train...
In caret: Classification and Regression Training