clusterEntropy: Calculation of per-cluster entropy In coseq: Co-Expression Analysis of Sequencing Data

Description

Provides the calculation of per-cluster entropy, equivalent to

Entropy(k) = ∑_{i \in C_k} \log (τ_{ik})

where τ_{ik} is the conditional probability of gene i belonging to cluster k and C_k corresponds to the set of indices of genes attributed to cluster k.

Usage

 1 clusterEntropy(probaPost) 

Arguments

 probaPost Matrix containing the conditional probabilities of belonging to each cluster for all observations

Value

Entropy per cluster

Author(s)

Cathy Maugis-Rabusseau

Examples

 1 2 3 4 ## Generate artificial matrix of conditional probabilities for K=5 clusters tmp <- matrix(runif(100*5), nrow=100, ncol=5) probaPost <- tmp / rowSums(tmp) clusterEntropy(probaPost) 

coseq documentation built on May 31, 2017, 2:38 a.m.