API for cthmm
Latent Continuous Time Markov Chains
| Global functions | |
|---|---|
| E.step.emission.init.all | Man page Source code |
| EM | Man page Source code |
| E_step_DDO | Source code |
| E_step_emission_init_all | Source code |
| E_step_emission_init_all_time_dep | Source code |
| NR_update | Source code |
| cappe.first.moment.tau | Source code |
| cappe.second.moment.tau | Source code |
| construct.emission.setup | Man page Source code |
| construct.init.setup | Man page Source code |
| construct.rates.setup | Man page Source code |
| delta.method.mat | Source code |
| dens.fun.deriv | Source code |
| dens.fun.deriv.single | Source code |
| diff_theta_beta_array | Man page Source code |
| dist.fun | Source code |
| dist.fun.deriv | Source code |
| dur_loop_R | Source code |
| dur_times_R | Source code |
| eigen_decomp_list_R | Source code |
| element.indices | Man page Source code |
| emission.score.hessian.old | Source code |
| emission_hessian_louis | Man page Source code Source code |
| emission_score_louis | Man page Source code |
| extract_array | Source code |
| extract_mat | Source code |
| fill.variables | Source code |
| forward_modified | Source code |
| forwardback_R | Source code |
| get.covariate.array | Man page Source code |
| get.deriv.array | Man page Source code |
| get.emission.init.states | Source code |
| get.emission.matrix.list | Man page Source code |
| get.init.matrix.list | Man page Source code |
| get.prob.array | Source code |
| get.rate.matrix.list | Man page Source code |
| get.rates | Source code |
| get.suff.stat.table | Man page Source code |
| get_LL | Source code |
| get_M1_M2 | Man page Source code |
| get_M1_M2_list | Man page Source code |
| get_covariance | Man page Source code |
| get_density | Source code |
| get_hazard | Source code |
| get_mean | Source code |
| get_sub_distribution | Source code |
| get_variance | Man page Source code |
| haz.fun.deriv | Source code |
| haz.fun.deriv.single | Source code |
| hazard_times | Man page Source code |
| init_hessian_louis | Man page Source code Source code |
| init_score_louis | Man page Source code |
| joint_dur_dur_times | Source code |
| joint_dur_trans_times | Source code |
| joint_mean_markov_jumps | Source code |
| joint_mean_markov_rewards | Source code |
| joint_trans_trans_times | Source code |
| louis_decomp_score_sq | Man page Source code |
| louis_information | Man page Source code |
| mat.exp.deriv | Source code |
| mat_exp_eigen_R | Source code |
| multinom.covariance.array | Source code |
| multinom.hessian | Source code |
| multinom.score | Source code |
| multinom.score.old | Source code |
| outerproduct | Man page Source code |
| phase.hazard | Man page Source code |
| phase.surv | Man page Source code |
| populate_emission_matrix | Source code |
| populate_initial_dist | Source code |
| populate_rate_matrix | Source code |
| rate.deriv | Source code |
| rate_hessian | Source code |
| rate_hessian_louis | Man page Source code Source code |
| rate_score | Source code |
| rate_score_louis | Man page Source code Source code |
| s_1 | Man page Source code |
| s_1_Ni | Man page Source code |
| s_1_di | Man page Source code |
| s_1_nij | Man page Source code |
| s_1_oij | Man page Source code |
| s_1_zi | Man page Source code |
| s_2 | Source code |
| se.dens.times | Source code |
| se.dist.times | Man page Source code |
| se.haz.times | Man page Source code |
| sub_dist_times | Man page Source code |
| t1_1 | Man page Source code |
| t1_1_Ni | Man page Source code |
| t1_1_di | Man page Source code |
| t1_1_nij | Man page Source code |
| t1_1_oij | Man page Source code |
| t1_1_zi | Man page Source code |
| t1_2 | Source code |
| trans_loop_R | Source code |
| trans_times_R | Source code |
| transition_prob_list | Source code |
| uniformization_mean | Source code |
| update.emission.params | Man page Source code |
| update.init.params | Man page Source code |
| update.multinom.params | Source code |
| update.rate.params | Man page Source code |
