get_M1_M2_list: get_M1_M2_list Get a list of first and second moments for...

In cthmm: Latent Continuous Time Markov Chains

Description

get_M1_M2_list Get a list of first and second moments for each subject

Usage

  get_M1_M2_list(rates.setup, init.setup, emission.setup,
    delta.list, rates.list, emission.list, obs.data.list,
    eigen.decomp.list, time.diffs.list,
    exact.time.ranks.list, transition.probabilties.list,
    absorb.state)

Arguments

rates.setup	rate setup object
init.setup	init setup object
emission.setup	emission setup object
delta.list	list with intial distribution for each subject
rates.list	list with rates for each subject
emission.list	list with emission matrices for each subject
obs.data.list	list with obs.data for each subject
eigen.decomp.list	list with eigen.decomp objects for each subject
time.diffs.list	list with interobservation intervals for each subject
exact.time.ranks.list	list encoding the observation number of times of absorption for each subject
transition.probabilities.list	list encoding the transition probabilities for each subject
absorb.state	vector with one or more absorbing states

Value

a list consisting of

M1_list	list with vectors of first moments for complete data sufficient statistics
M2_list	list with matrices of second moments for complete data sufficient statistics

cthmm documentation built on May 2, 2019, 5:46 p.m.