construct.emission.setup | Get an emission distribution design setup object |
construct.init.setup | Get an initial distribution design setup object |
construct.rates.setup | Get a rate matrix design setup object |
diff_theta_beta_array | diff_theta_beta_array get an array that corresponds to... |
element.indices | Get the score element indices |
EM | EM |
emission_hessian_louis | emission_hessian_louis Get the complete data hessian matrix... |
emission_score_louis | emission_score_louis Get the score matrix rate parameters |
E.step.emission.init.all | E step for emission and initial distributions |
get_covariance | Covariance estimate for latent CTMC parameters |
get.covariate.array | Get the covariate arrays |
get.deriv.array | Get deriv arrays based on the non-fixed parameters |
get.emission.matrix.list | Individual Emission Matrices |
get.init.matrix.list | Individual Initial Distributions |
get_M1_M2 | get_M1_M2 get the list with first and second moments of... |
get_M1_M2_list | get_M1_M2_list Get a list of first and second moments for... |
get.rate.matrix.list | Individual Rate Matrices |
get.suff.stat.table | get.suff.stat.table |
get_variance | Get the information matrix for the parameter esitmates from... |
hazard_times | Latent CTMC hazard functions |
init_hessian_louis | Get the complete data hessian matrix for initial dist... |
init_score_louis | init_score_louis Get the inital dist scores |
louis_decomp_score_sq | Louis decomposition score component |
louis_information | Get the information matrix using the Louis decomposition... |
outerproduct | Outerproduct |
phase.hazard | Hazard of reaching absorbing state |
phase.surv | Survivial in phase type model |
rate_hessian_louis | rate_hessian_louis Get the complete data hessian matrix for... |
rate_score_louis | rate_score_louis Get the score matrix rate parameters |
s_1 | Get s matrix for first moments of complete data sufficient... |
s_1_di | s function for s_k(x_k,x_k+1)[1:num.times,stat[l]], if the... |
s_1_Ni | s function for transitions... |
s_1_nij | s function for s_k(x_k,x_k+1)[1:num.times,stat[l]], if the... |
s_1_oij | s function for transitions... |
s_1_zi | s function for transitions... |
se.dist.times | Subdistribution Standard Errors |
se.haz.times | Hazard Standard Errors |
sub_dist_times | Latent CTMC subdistribution functions |
t1_1 | Get t1 for first moments of complete data sufficient... |
t1_1_di | Get first moment t1 for di |
t1_1_Ni | Get first moment t1 for Ni |
t1_1_nij | Get first moment t1 for nij |
t1_1_oij | Get first moment t1 for oij |
t1_1_zi | Get first moment t1 for zi |
update.emission.params | Performs Newton Raphson to get MLE for emission parameters. |
update.init.params | Performs Newton Raphson to get MLE for initial dist... |
update.rate.params | Performs Newton Raphson to get MLE for rate parameters. |
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