Man pages for cthmm
Latent Continuous Time Markov Chains
| construct.emission.setup | Get an emission distribution design setup object |
| construct.init.setup | Get an initial distribution design setup object |
| construct.rates.setup | Get a rate matrix design setup object |
| diff_theta_beta_array | diff_theta_beta_array get an array that corresponds to... |
| element.indices | Get the score element indices |
| EM | EM |
| emission_hessian_louis | emission_hessian_louis Get the complete data hessian matrix... |
| emission_score_louis | emission_score_louis Get the score matrix rate parameters |
| E.step.emission.init.all | E step for emission and initial distributions |
| get_covariance | Covariance estimate for latent CTMC parameters |
| get.covariate.array | Get the covariate arrays |
| get.deriv.array | Get deriv arrays based on the non-fixed parameters |
| get.emission.matrix.list | Individual Emission Matrices |
| get.init.matrix.list | Individual Initial Distributions |
| get_M1_M2 | get_M1_M2 get the list with first and second moments of... |
| get_M1_M2_list | get_M1_M2_list Get a list of first and second moments for... |
| get.rate.matrix.list | Individual Rate Matrices |
| get.suff.stat.table | get.suff.stat.table |
| get_variance | Get the information matrix for the parameter esitmates from... |
| hazard_times | Latent CTMC hazard functions |
| init_hessian_louis | Get the complete data hessian matrix for initial dist... |
| init_score_louis | init_score_louis Get the inital dist scores |
| louis_decomp_score_sq | Louis decomposition score component |
| louis_information | Get the information matrix using the Louis decomposition... |
| outerproduct | Outerproduct |
| phase.hazard | Hazard of reaching absorbing state |
| phase.surv | Survivial in phase type model |
| rate_hessian_louis | rate_hessian_louis Get the complete data hessian matrix for... |
| rate_score_louis | rate_score_louis Get the score matrix rate parameters |
| s_1 | Get s matrix for first moments of complete data sufficient... |
| s_1_di | s function for s_k(x_k,x_k+1)[1:num.times,stat[l]], if the... |
| s_1_Ni | s function for transitions... |
| s_1_nij | s function for s_k(x_k,x_k+1)[1:num.times,stat[l]], if the... |
| s_1_oij | s function for transitions... |
| s_1_zi | s function for transitions... |
| se.dist.times | Subdistribution Standard Errors |
| se.haz.times | Hazard Standard Errors |
| sub_dist_times | Latent CTMC subdistribution functions |
| t1_1 | Get t1 for first moments of complete data sufficient... |
| t1_1_di | Get first moment t1 for di |
| t1_1_Ni | Get first moment t1 for Ni |
| t1_1_nij | Get first moment t1 for nij |
| t1_1_oij | Get first moment t1 for oij |
| t1_1_zi | Get first moment t1 for zi |
| update.emission.params | Performs Newton Raphson to get MLE for emission parameters. |
| update.init.params | Performs Newton Raphson to get MLE for initial dist... |
| update.rate.params | Performs Newton Raphson to get MLE for rate parameters. |
