API for ddepn
Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.
| Global functions | |
|---|---|
| addstimuli | Man page |
| adjacencyMatrix_to_logicalRules | Man page |
| bestgam | Man page |
| bin2dec | Man page |
| calcpr | Man page |
| center_ddepn | Man page |
| checkC | Man page |
| cls | Man page |
| compareGraphs | Man page |
| coord | Man page |
| create_signetwork | Man page |
| create_signetwork_cv | Man page |
| crossover | Man page |
| ddepn | Man page |
| ddepn-package | Man page |
| detailed.to.simple.regulations | Man page |
| draw_segments | Man page |
| esub | Man page |
| expand.gamma | Man page |
| format_ddepn | Man page |
| gelman_diag | Man page |
| get.aic | Man page |
| get.arrowhead | Man page |
| get.arrowtail | Man page |
| get.bic | Man page |
| get.data | Man page |
| get.gammashifted | Man page |
| get.labels | Man page |
| get.partitions | Man page |
| get.phi.final | Man page |
| get.phi.final.mcmc | Man page |
| getE | Man page |
| get_gamma_consensus | Man page |
| get_reps_tps | Man page |
| get_theta_consensus | Man page |
| getfirstphi | Man page |
| hcc1954 | Man page |
| hcc1954fcf | Man page |
| hcc1954fcfmedian | Man page |
| hcc1954raw | Man page |
| heatmapcolors | Man page |
| initialphi | Man page |
| internal.functions | Man page |
| is_consistent | Man page |
| kegggraphs | Man page |
| layout.ellipsis | Man page |
| likl | Man page |
| make_edge_df | Man page |
| makedata | Man page |
| mcmc_accept | Man page |
| mcmc_ddepn | Man page |
| mcmc_move | Man page |
| mcmc_performance | Man page |
| netga | Man page |
| order_experiments | Man page |
| pad_data | Man page |
| perform.hmmsearch | Man page |
| perform.hmmsearch_C | Man page |
| perform.hmmsearch_C_globalest | Man page |
| perform.hmmsearch_R | Man page |
| perform.hmmsearch_globalest | Man page |
| perform_edge_test | Man page |
| perform_network_tests | Man page |
| pgs | Man page |
| plot_edgeconfidences | Man page |
| plot_mcmctraces | Man page |
| plot_overlap | Man page |
| plot_profiles | Man page |
| plotdetailed | Man page |
| plotdetailed_Rgraphviz | Man page |
| plotmatrix | Man page |
| plotrepresult | Man page |
| posterior | Man page |
| pri | Man page |
| prior | Man page |
| propagate.effect.set | Man page |
| propagate.effect.simple | Man page |
| random.gammaprime | Man page |
| replicatecolumns | Man page |
| resume_ddepn | Man page |
| reverse.direction | Man page |
| run_checks | Man page |
| runmcmc | Man page |
| samplephi | Man page |
| signalnetwork | Man page |
| simulatedata | Man page |
| tp.median | Man page |
| transitive.closure | Man page |
| transitive.reduction | Man page |
| trapezoid | Man page |
| uniquegamma | Man page |
| uniquegammaposs | Man page |
| updateA | Man page |
| viterbi | Man page |
| wrapddepn | Man page |
| zlambda | Man page |
