propagate.effect: propagate.effect.set propagate.effect.simple

In ddepn: Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.

Description

Effect propagation through signalling network. Usually called internally.

Usage

propagate.effect.set(phi,stimuli,allow.stim.off=FALSE)
propagate.effect.simple(phi,stimulus,stimuli,allow.stim.off=FALSE)
bin2dec(x)

Arguments

phi	Network
stimuli	The input stimuli list.
stimulus	One input stimulus.
x	binary vector
allow.stim.off	Boolean. If TRUE, the stimulus can become passive at some time. This will generate additional reachable system states, in particular all states from the normal state matrix, generated by the propagation, but with the stimulus node set to 0.

Details

propagate.effect.set performs effect propagation for multiple experiments, identified by the different stimuli. It calls propagate.effect.simple separately for each stimulus. bin2dec takes a 0/1 vector and converts it to a decimal number.

Value

propagate.effect.set returns the state transition matrix containing all possible state vectors.

Author(s)

Christian Bender

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

ddepn documentation built on May 2, 2019, 4:42 p.m.