addstimuli: Add dummy stimulus nodes to the data matrix.

In ddepn: Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.

Description

Add the treatments (stimuli, inhibitions) defined in the column names of the data matrix to the data matrix as dummy nodes, if not there.

Usage

addstimuli(dat)

Arguments

dat	The data matrix. See ddepn for more information.

Details

Uses the information from the column names of the data matrix to derive the input treatments (either stimuli or inhibition) for the experiment. Each stimulus is added as node to the network to be inferred, and thus as row to the data matrix. For example, activating treatments could be stimulation of cells by growth factors, inhibiting treatments could be treatment with a specific drug.

Value

The modified data matrix.

Author(s)

Christian Bender

See Also

ddepn

Examples

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ddepn documentation built on May 2, 2019, 4:42 p.m.