format_ddepn: Performs renaming of the colnames of dataset hcc1954 to make...

In ddepn: Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.

Description

A little helper that strips of the information on biological replicates in the example data matrix hcc1954. After stripping the matrix can be directly used as input for ddepn.

Usage

format_ddepn(dat)

Arguments

dat	A data matrix in the format described in ddepn, except for the column names, which still contain a label for the biological replicate. See the details for an example.

Details

Example for column names holding information on biological replicates:

	EGF-3_1	EGF-5_1	EGF-3_1	EGF-5_1	EGF-3_2	EGF-5_2	EGF-3_2	EGF-5_2
EGF ...
X ...
AKT ...

The format is STIMULUS-biolreplicate_time, i.e. EGF-3_1 means experiment with EGF stimulation, biological replicate labeled as 3 at time point 1. The biological replicate should be labeled by numbers only.

Author(s)

Christian Bender

See Also

hcc1954

Examples

  ## Not run: 
    ## load package
    library(ddepn)
    data(hcc1954)
    format_ddepn(hcc1954)
  
## End(Not run)

ddepn documentation built on May 2, 2019, 4:42 p.m.