Files in ddepn
Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.
DESCRIPTION
NAMESPACE
inst/doc/ddepn.Rnw
inst/doc/ddepn.R
inst/doc/ddepn.pdf
vignettes/mcmcprofiles.pdf
vignettes/mcmcoutput.pdf
vignettes/netgaresult.pdf
vignettes/netmcmcresult.pdf
vignettes/mcmcoutput1.pdf
vignettes/mcmctest3_2_stats.pdf
vignettes/mcmcedgeconf.pdf
vignettes/examplenet.pdf
vignettes/ddepn.Rnw
vignettes/references.bib
vignettes/scorenetgatest.pdf
vignettes/mcmcoutput2.pdf
vignettes/OLDmcmcoutput.pdf
R/expand.gamma.R
R/plot_profiles.R
R/perform.hmmsearch.R
R/uniquegamma.R
R/internal.functions.R
R/mcmc_accept.R
R/signalnetwork.R
R/run_checks.R
R/getfirstphi.R
R/plotdetailed_Rgraphviz.R
R/coord.R
R/zlambda.R
R/crossover.R
R/format_ddepn.R
R/plotdetailed.R
R/netga.R
R/get.phi.final.R
R/addstimuli.R
R/gelman_diag.R
R/plotrepresult.R
R/likl.R
R/plot_edgeconfidences.R
R/simulatedata.R
R/samplephi.R
R/random.gammaprime.R
R/bestgam.R
R/ddepn.R
R/modelcomparison.R
R/plot_overlap.R
R/mcmc_performance.R
R/center_ddepn.R
R/plot_mcmctraces.R
R/prior.R
R/makedata.R
R/mcmc_move.R
R/compareGraphs.R
R/propagate.effect.R
R/posterior.R
R/create_signetwork.R
R/adjacencyMatrix_to_logicalRules.R
R/mcmc_ddepn.R
src/perform_hmmsearch_globalest.h
src/utility_functions.c
src/perform_hmmsearch.c
src/perform_hmmsearch.h
src/utility_functions.h
src/perform_hmmsearch_globalest.c
man/mcmc_ddepn.Rd
man/likl.Rd
man/center_ddepn.Rd
man/format_ddepn.Rd
man/uniquegamma.Rd
man/kegggraphs.Rd
man/random.gammaprime.Rd
man/posterior.Rd
man/plotdetailed.Rd
man/signalnetwork.Rd
man/plot_edgeconfidences.Rd
man/propagate.effect.Rd
man/hcc1954.Rd
man/plot_mcmctraces.Rd
man/get.phi.final.Rd
man/plotdetailed_Rgraphviz.Rd
man/zlambda.Rd
man/perform.hmmsearch.Rd
man/samplephi.Rd
man/plotrepresult.Rd
man/adjacencyMatrix_to_logicalRules.Rd
man/mcmc_accept.Rd
man/addstimuli.Rd
man/prior.Rd
man/crossover.Rd
man/compareGraphs.Rd
man/mcmc_performance.Rd
man/plot_overlap.Rd
man/expand.gamma.Rd
man/modelcomparison.Rd
man/run_checks.Rd
man/bestgam.Rd
man/netga.Rd
man/mcmc_move.Rd
man/makedata.Rd
man/gelman_diag.Rd
man/simulatedata.Rd
man/plot_profiles.Rd
man/ddepn.Rd
man/ddepn-package.Rd
man/getfirstphi.Rd
man/internal.functions.Rd
man/create_signetwork.Rd
man/coord.Rd
build/vignette.rds
data/kegggraphs.RData
data/hcc1954.RData
data/hcc1954raw.RData
