internal.functions: internal.functions get.data plotmatrix get.gammashifted...

Description Usage Arguments Details Value Author(s)

Description

Some internal functions, usually not to be called directly.

Usage

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get.data(gammax,mu.bg=0, sd.bg=0.1,
		mu.signal.a=1, sd.signal.a=0.5,
		mu.signal.i=-1, sd.signal.i=0.5,
		stimulus=NULL,TT=10,R.t=4,R.b=3)

plotmatrix(mat,name="")

get.gammashifted(gammax, partitions)

get.partitions(TT, npairs)

transitive.reduction(g)

transitive.closure(g, mat = FALSE, loops = TRUE)

tp.median(dat)

detailed.to.simple.regulations(phi)

reverse.direction(phi, i, switchtype=FALSE)

pad_data(dat)

order_experiments(dat)

get_reps_tps(nx)  

Arguments

Functions are usually not called directly.

gammax

todo

mu.bg, sd.bg, mu.signal.a, sd.signal.a, mu.signal.i, sd.signal.i

todo

stimulus

todo

R.t,R.b

todo

partitions

todo

mat

todo

name

todo

TT

todo

npairs

todo

g

todo

loops

todo

dat

todo

phi

todo

i

todo

switchtype

todo

nx

todo

Details

Some internal functions, usually not to be called directly. The code for transitive.reduction and transitive.closure was written by Holger Froehlich and is published in the R-package 'nem' available on bioconductor. However, to avoid forcing to load the rather big package 'nem' the code is included in this package, too.

Value

none

Author(s)

Christian Bender


ddepn documentation built on May 2, 2019, 4:42 p.m.