Functions for querying the EBI Metagenomics Portal (https://www.ebi.ac.uk/metagenomics/). The current main focus is on taxa abundance data, but the intention is that this package should evolve into a general purpose package for working with EBI Metagenomics data using R.
|Date of publication||2016-10-20 06:30:13|
|Maintainer||Darren Wilkinson <email@example.com>|
convertOtuTad: Converts an OTU count data frame to a TAD data frame
getProjectsList: Download the EMG projects list into a data frame
getProjectSummary: Download an EMG project summary into a data frame
getRunOtu: Downloads OTU count data associated with a EMG run
getSampleOtu: Downloads and merges all of the OTU count data associated...
mergeOtu: Merges two OTU count data data frames to produce a combined...
plotOtu: Plots OTU count data
projectRuns: Find runs associated with an EMG project
projectSamples: Find samples associated with an EMG project
read.otu.tsv: Reads OTU count data associated with a EMG run
read.project.csv: Read an EMG project summary into a data frame
runsBySample: Find runs associated with a particular sample ID within an...
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