read.otu.tsv: Reads OTU count data associated with a EMG run

In ebimetagenomics: EBI Metagenomics Portal

Description

This function reads an OTU count data file associated with a particular run from the EMG portal. The OTU data is returned as a data frame.

Usage

read.otu.tsv(fileName,...)

Arguments

fileName	A string representing a filename (or URL) corresponding to a valid EMG OTU TSV file.
...	Extra arguments to be passed to read.delim.

Value

An R data frame containing OTU count data. The first column is the OTU ID, the second is the count, and the third contains a taxonomic classification.

See Also

getSampleOtu, mergeOtu, getRunOtu

ebimetagenomics documentation built on May 2, 2019, 5 p.m.