plotOtu: Plots OTU count data

Description Usage Arguments Value See Also Examples

Description

This function takes as input a data frame representing OTU counts, such as returned by getRunOtu, plots it on the graphics device.

Usage

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plotOtu(otu)

Arguments

otu

An OTU data frame.

Value

The function returns silently, and is called purely for its side-effect of rendering plots on the graphics device.

See Also

getSampleOtu, getRunOtu, convertOtuTad

Examples

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ps=getProjectSummary("SRP047083")
samp=projectSamples(ps)
runs=runsBySample(ps,samp[2])
otu=getRunOtu(runs[1])
plotOtu(otu)

ebimetagenomics documentation built on May 2, 2019, 5 p.m.