getProjectSummary: Download an EMG project summary into a data frame
In ebimetagenomics: EBI Metagenomics Portal
Description
Usage
Arguments
Value
See Also
Examples
Description
This downloads an EMG project summary file into an R data frame for subsequent analysis.
Usage
1
getProjectSummary(projectID)
Arguments
projectID
A character string representing an EMG accession ID
(eg. MGYS00002669 or SRP047083).
Value
An R data frame containing a list of all samples and runs associated
with the project, one row per run. The projectID is associated
with the data frame via the attribute project.id.
See Also
getProjectsList, projectSamples, projectRuns,
runsBySample, read.project.csv
Examples
1
2
3
ps = getProjectSummary("MGYS00000646")
# Tabulate number of runs by sample
table(ps$sample_id)
ebimetagenomics documentation built on May 2, 2019, 5 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also Examples
Description
This downloads an EMG project summary file into an R data frame for subsequent analysis.
Usage
1 | getProjectSummary(projectID)
|
Arguments
projectID |
A character string representing an EMG accession ID (eg. MGYS00002669 or SRP047083). |
Value
An R data frame containing a list of all samples and runs associated
with the project, one row per run. The projectID is associated
with the data frame via the attribute project.id.
See Also
getProjectsList, projectSamples, projectRuns,
runsBySample, read.project.csv
Examples
1 2 3 | ps = getProjectSummary("MGYS00000646")
# Tabulate number of runs by sample
table(ps$sample_id)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.