estimate: Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data

Predicts tumor purity, and the presence of stromal/immune cells in tumor tissues using gene expression data.

AuthorKosuke Yoshihara, Hoon Kim, Roel GW Verhaak
Date of publication2016-10-04 21:13:08
MaintainerKosuke Yoshihara <kyoshihara@mdanderson.org>
LicenseGPL-2
Version1.0.13
https://r-forge.r-project.org/projects/estimate/

View on R-Forge

Files

DESCRIPTION
NAMESPACE
R
R/estimateScore.R R/filterCommonGenes.R R/outputGCT.R R/plotPurity.R R/zzz.R
build
build/estimate.pdf
build/vignette.rds
data
data/PurityDataAffy.RData
data/SI_geneset.RData
data/common_genes.RData
inst
inst/COPYRIGHTS
inst/NEWS.Rd
inst/doc
inst/doc/ESTIMATE_Vignette.R
inst/doc/ESTIMATE_Vignette.Rnw
inst/doc/ESTIMATE_Vignette.pdf
inst/extdata
inst/extdata/PurityDataAffy.txt
inst/extdata/SI_geneset.gmt
inst/extdata/common_genes.txt
inst/extdata/sample_estimate.gct
inst/extdata/sample_input.gct
inst/extdata/sample_input.txt
inst/extdata/sample_purity.gct
inst/util
inst/util/makeData.R
man
man/e00-estimate-package.Rd man/e50-estimateScore.Rd man/e50-filterCommonGenes.Rd man/e50-outputGCT.Rd man/e50-plotPurity.Rd man/e90-PurityDataAffy-data.Rd man/e90-SI_geneset-data.Rd man/e90-common_genes-data.Rd
vignettes
vignettes/ESTIMATE_Vignette.Rnw

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