estimate: Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data

Predicts tumor purity, and the presence of stromal/immune cells in tumor tissues using gene expression data.

AuthorKosuke Yoshihara, Hoon Kim, Roel GW Verhaak
Date of publication2016-10-04 21:13:08
MaintainerKosuke Yoshihara <kyoshihara@mdanderson.org>
LicenseGPL-2
Version1.0.13
https://r-forge.r-project.org/projects/estimate/

View on R-Forge

Files in this package

estimate/DESCRIPTION
estimate/NAMESPACE
estimate/R
estimate/R/estimateScore.R estimate/R/filterCommonGenes.R estimate/R/outputGCT.R estimate/R/plotPurity.R estimate/R/zzz.R
estimate/build
estimate/build/estimate.pdf
estimate/build/vignette.rds
estimate/data
estimate/data/PurityDataAffy.RData
estimate/data/SI_geneset.RData
estimate/data/common_genes.RData
estimate/inst
estimate/inst/COPYRIGHTS
estimate/inst/NEWS.Rd
estimate/inst/doc
estimate/inst/doc/ESTIMATE_Vignette.R
estimate/inst/doc/ESTIMATE_Vignette.Rnw
estimate/inst/doc/ESTIMATE_Vignette.pdf
estimate/inst/extdata
estimate/inst/extdata/PurityDataAffy.txt
estimate/inst/extdata/SI_geneset.gmt
estimate/inst/extdata/common_genes.txt
estimate/inst/extdata/sample_estimate.gct
estimate/inst/extdata/sample_input.gct
estimate/inst/extdata/sample_input.txt
estimate/inst/extdata/sample_purity.gct
estimate/inst/util
estimate/inst/util/makeData.R
estimate/man
estimate/man/e00-estimate-package.Rd estimate/man/e50-estimateScore.Rd estimate/man/e50-filterCommonGenes.Rd estimate/man/e50-outputGCT.Rd estimate/man/e50-plotPurity.Rd estimate/man/e90-PurityDataAffy-data.Rd estimate/man/e90-SI_geneset-data.Rd estimate/man/e90-common_genes-data.Rd
estimate/vignettes
estimate/vignettes/ESTIMATE_Vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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