e50-outputGCT: Write gene expression data in GCT format

In estimate: Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data

Description

This function writes an input file in GCT format.

Usage

outputGCT(input.f, output.f)

Arguments

input.f	character string specifying name of input file, or data frame including gene-level expression data
output.f	character string specifying name of output file

Details

This function writes gene-level expression data to GCT format file. Input file must be a text format file.

Author(s)

Kosuke Yoshihara [e-mail]

References

Reich M, et al.
" GenePattern 2.0."
Nature Genetics 2006, 38:500-501.

Examples

in.file <- system.file("extdata", "sample_input.txt", package="estimate")
out.file <- tempfile(pattern="estimate", fileext=".gct")
outputGCT(in.file, out.file)

estimate documentation built on May 2, 2019, 4:38 p.m.