e90-PurityDataAffy-data: Affymetrix data
In estimate: Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data
Description
Usage
Format
Author(s)
Source
References
Description
This data set contains stromal, immune, and ESTIMATE scores in all
Affymetrix expression data (n=995) that was used to develop the formula for
predicting tumor purity based on raw estimate score.
This data set also contains tumor purity based on ABSOLUTE algorithm,
predicted tumor purity, and 95
ESTIMATE algorithm.
Usage
1
Format
The object PurityDataAffy is a data.frame with components:
- tumor.purity
numeric scalar specifying tumor purity calculated by
ABSOLUTE algorithm
- StromalScore
numeric scalar specifying the presence of stromal cells
in tumor tissue
- ImmuneScore
numeric scalar specifying the level of infiltrating
immune cells in tumor tissue
- ESTIMATEScore
numeric scalar specifying tumor cellularity
- fit
numeric scalar specifying estimated tumor purity based on
ESTIMATE algorithm
- lwr.p
numeric scalar specifying 5 percent confidence interval
- upr.p
numeric scalar specifying 95 percent confidence interval
Author(s)
Kosuke Yoshihara kyoshihara@mdanderson.org
Source
The Cancer Genome Atlas
References
Carter SL, et al.
"Absolute quantification of somatic DNA alterations in human cancer."
Nat Biotechnol 2012, 30:413-421.
estimate documentation built on May 2, 2019, 4:38 p.m.
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Description Usage Format Author(s) Source References
Description
This data set contains stromal, immune, and ESTIMATE scores in all Affymetrix expression data (n=995) that was used to develop the formula for predicting tumor purity based on raw estimate score.
This data set also contains tumor purity based on ABSOLUTE algorithm, predicted tumor purity, and 95 ESTIMATE algorithm.
Usage
1 |
Format
The object PurityDataAffy is a data.frame with components:
- tumor.purity
numeric scalar specifying tumor purity calculated by ABSOLUTE algorithm
- StromalScore
numeric scalar specifying the presence of stromal cells in tumor tissue
- ImmuneScore
numeric scalar specifying the level of infiltrating immune cells in tumor tissue
- ESTIMATEScore
numeric scalar specifying tumor cellularity
- fit
numeric scalar specifying estimated tumor purity based on ESTIMATE algorithm
- lwr.p
numeric scalar specifying 5 percent confidence interval
- upr.p
numeric scalar specifying 95 percent confidence interval
Author(s)
Kosuke Yoshihara kyoshihara@mdanderson.org
Source
The Cancer Genome Atlas
References
Carter SL, et al.
"Absolute quantification of somatic DNA alterations in human cancer."
Nat Biotechnol 2012, 30:413-421.
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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