This data set contains stromal, immune, and ESTIMATE scores in all Affymetrix expression data (n=995) that was used to develop the formula for predicting tumor purity based on raw estimate score.
This data set also contains tumor purity based on ABSOLUTE algorithm, predicted tumor purity, and 95 ESTIMATE algorithm.
PurityDataAffy is a
data.frame with components:
numeric scalar specifying tumor purity calculated by ABSOLUTE algorithm
numeric scalar specifying the presence of stromal cells in tumor tissue
numeric scalar specifying the level of infiltrating immune cells in tumor tissue
numeric scalar specifying tumor cellularity
numeric scalar specifying estimated tumor purity based on ESTIMATE algorithm
numeric scalar specifying 5 percent confidence interval
numeric scalar specifying 95 percent confidence interval
Kosuke Yoshihara email@example.com
The Cancer Genome Atlas
Carter SL, et al.
"Absolute quantification of somatic DNA alterations in human cancer."
Nat Biotechnol 2012, 30:413-421.
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