e90-SI_geneset-data: two signatures for estimate

In estimate: Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data

Description

This data set contains two gene signatures (stromal and immune signatures). The stromal signature including 141 stroma-specific genes is designed to capture the presence of stroma in tumor tissue. The immune signature consisting of 141 immune cell-specific genes represents the infiltration of immune cells in tumor tissue.

Usage

data(SI_geneset)

Format

The object SI_geneset is a data.frame with components:

StromalSignature

character string specifying 141 genes in stromal signature

ImmuneSignature

character string specifying 141 genes in immune signature

Note

This data set was based on ‘SI_geneset.gmt’ (in the ‘extdata’ directory).

Author(s)

Kosuke Yoshihara [e-mail]

estimate documentation built on May 2, 2019, 4:38 p.m.