e00-estimate-package: ESTIMATE

In estimate: Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data

Description

ESTIMATE (Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression data) is a package for predicting tumor purity, and the presence of stromal/immune cells in tumor tissues using gene expression data.

Details

Package:	estimate
Type:	Package
Version:	\Sexpr[results=text]{packageDescription("estimate")$Version}
Date:	\Sexpr[results=text]{packageDescription("estimate")$Date}
License:	\Sexpr[results=text]{packageDescription("estimate")$License}

For a complete list of functions, use library(help="estimate").

Author(s)

Kosuke Yoshihara [e-mail], P. Roebuck [e-mail]

References

Subramanian A, et al.
"Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles."
Proc Natl Acad Sci U S A 2005, 102:15545-15550.

Barbie DA, et al.
"Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1."
Nature 2009, 462:108-112.

Verhaak RG, et al.
"Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1."
Cancer Cell 2010, 17:98-110.

estimate documentation built on May 2, 2019, 4:38 p.m.