qsub: Build Commands to Invoke SGE qsub

In metrumrg: Pharmacometric Tools for Data Preparation, Modeling, Simulation, and Reporting

Description

Builds one or more commands suitable for invoking Sun Grid Engine's qsub in a shell.

Usage

qsub(command, ...)

Arguments

command	character
...	extra arguments

Details

This is almost a wrapper, except that it does not actually make the system call. All argument values are character. Values are concatenated using paste, with the usual effects if any arguments have length greater than one. Arguments may be used more than once, and will be represented in the order received. Passing NA results in the argument instance being dropped. Use an empty string as the value for a flag that does not take a value, e.g. ‘soft’. Quote the ‘@’ argument in backticks.

Value

character

Author(s)

Tim Bergsma

References

http://metrumrg.googlecode.com

See Also

• runCommand

Examples

qsub('nm.pl',`@`='options',hard='',i='stdin',soft='',hard='',N=c('Run3c','Run3e'),
hold_jid=c(NA,'Run3c'))
#[1] 'qsub -@ options -hard  -i stdin -soft  -hard  -N Run3c  nm.pl'               
#[2] 'qsub -@ options -hard  -i stdin -soft  -hard  -N Run3e -hold_jid Run3c nm.pl'

metrumrg documentation built on May 2, 2019, 5:55 p.m.