Description Usage Arguments Details Value Author(s)
For a mixed stock analysis data set with R
sources, runs R
Gibbs-sampler chains (one starting from a majority of the contribution
from each source) and calculates Gelman and Rubin diagnostics on the
combined set of chains.
1 2 |
data |
A mixed stock analysis data set (either an object of type
|
tot |
Total length of each MCMC chain |
burn |
Burn-in time for MCMC chains |
verbose |
Produce verbose output? |
chainfrac |
Fraction of each chain to discard. By default, chainfrac is set to (1-1/R), so that the total length of the combined chain is equal to (R*tot/R=tot). |
rseed |
Seed for random-number generator |
calls CODA function gelman.diag
Returns the diagnostic from the CODA function
Ben Bolker
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