Description Usage Format Source
demo.paths includes pathway ids and optimal plotting parameters when calling pathview.
GSE16873 is a breast cancer study (Emery et al, 2009) downloaded from
Gene Expression Omnibus (GEO). Dataset gse16873 is pre-processed using FARMS
method and includes 6 patient cases,
each with HN (histologically normal) and DCIS (ductal carcinoma in situ)
RMA samples. The same dataset is also used in gage
package. Dataset gse16873.d includes the gene expression changes of two
pairs of DCIS vs HN samples.
1 2 |
demo.paths is a named list with ids and plotting parameters for 3 pathways. For details do:
demo.paths); demo.paths
gse16873.d is a numeric matrix with over 10000 rows (genes) and 2
columns (samples). For details do:
data(gse16873.d); str(gse16873.d)
.
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE16873
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