conv.evol: Simulate convergent evolution
In synDss: Recombination detection using synonymous distances
Description
This function simulates convergent evolution between two taxa from a DNA sequence alignment.
Usage
1
conv.evol(alignment, perc, taxa1, taxa2, map)
Arguments
alignment
The DNA sequence alignment, as a matrix of A,C,T,G characters
perc
Percentage of possible one-step codon changes into identical amino acids to make.
taxa1
A number indicating the row of the first taxa to use
taxa2
A number indicating the row of the second taxa to use
map
Codon map
synDss documentation built on May 2, 2019, 5:40 p.m.
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Description
This function simulates convergent evolution between two taxa from a DNA sequence alignment.
Usage
1 | conv.evol(alignment, perc, taxa1, taxa2, map)
|
Arguments
alignment |
The DNA sequence alignment, as a matrix of A,C,T,G characters |
perc |
Percentage of possible one-step codon changes into identical amino acids to make. |
taxa1 |
A number indicating the row of the first taxa to use |
taxa2 |
A number indicating the row of the second taxa to use |
map |
Codon map |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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