Description Usage Arguments Value
The synonymous distance function in the robustDist package uses a 1,2,3,4 coding for nucleotides instead of A,C,G,T. This function makes the conversion.
1 | read.phylosim(alignment)
|
alignment |
A sequence alignment in the format of a matrix of A,C,G,T, or of codons |
Matrix of 1,2,3,4
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