Files in synDss
Recombination detection using synonymous distances
DESCRIPTION
NAMESPACE
inst/seqdata/set7_pol.fasta
inst/seqdata/Salmonella_fimH_aligned-18alleles.txt
inst/seqdata/set7_env.fasta
inst/paml/template.ctl
inst/paml/template.dat
doc/tutorial.Rnw
doc/sal18.pdf
R/make.dat.R
R/calc.null.pboot.syn.R
R/fasta.to.alignment.R
R/calc.Dss.syn.R
R/read.phylosim.R
R/paml.codeml.R
R/calc.null.pboot.R
R/sim.codon.R
R/make.mj.align.R
R/synDss-internal.R
R/optim.phylo.ls.all.R
R/conv.evol.R
R/nuc.to.codon.R
R/calc.Dss.R
man/sim.codon.Rd
man/fasta.to.alignment.Rd
man/make.dat.Rd
man/calc.Dss.Rd
man/synDss-package.Rd
man/calc.null.pboot.Rd
man/read.phylosim.Rd
man/calc.Dss.syn.Rd
man/paml.codeml.Rd
man/conv.evol.Rd
man/optim.phylo.ls.all.Rd
man/nuc.to.codon.Rd
man/make.mj.align.Rd
man/calc.null.pboot.syn.Rd
