Files in ALDEx2

Analysis Of Differential Abundance Taking Sample Variation Into Account

README.md R/plot.aldex.r R/clr_glm.r R/progress.R R/iqlr_features.r R/clr_glm-tpq.R R/AllGenerics.R R/clr_ttest.r R/clr_function.r R/rdirichlet.r R/plotFeature.aldex.r R/expectedDistance.aldex.r R/AllClasses.R R/clr_corr.R R/clr_effect.r R/aldex.r R/glm_effect.r R/stats.fast.R vignettes/ALDEx2_vignette.Rmd man/aldex.glm.Rd man/aldex.effect.Rd man/getSampleIDs-method.Rd man/numFeatures-method.Rd man/ALDEx2m-package.Rd man/aldex.plotFeature.Rd man/getDenom-method.Rd man/expectedDistance.Rd man/aldex.clr-class.Rd man/getFeatureNames-method.Rd man/getMonteCarloReplicate-method.Rd man/plot.aldex.Rd man/aldex.clr.function-methods.Rd man/getMonteCarloSample-method.Rd man/aldex.set.mode.Rd man/aldex.ttest.Rd man/getFeatures-method.Rd man/numConditions-method.Rd man/selex.Rd man/aldex.glm.effect.Rd man/synth2.Rd man/numMCInstances-method.Rd man/getReads-method.Rd man/aldex.corr.Rd man/getMonteCarloInstances-method.Rd man/aldex.Rd man/aldex.kw.Rd tests/testthat.R tests/testthat/test-clr-conds.R tests/testthat/test-aldex.ttest.R tests/testthat/test-aldex.kw.R tests/testthat/test-stats.fast.R inst/doc/ALDEx2_vignette.R inst/doc/ALDEx2_vignette.pdf inst/doc/ALDEx2_vignette.Rmd