getSampleIDs-method: getSampleIDs
In ALDEx2: Analysis Of Differential Abundance Taking Sample Variation Into Account

Description Usage Arguments Details Value See Also Examples

Returns the names of the samples for an aldex.clr object. These can be used to access the original reads, as in reads\$sampleID (if the reads are a data frame).

1	getSampleIDs(.object)

.object

A aldex.clr object containing the Monte Carlo Dirochlet instances derived from estimating the technical variance of the raw read count data, along with sample and feature information.

Returns the names of the samples. These can be used to access the original reads, as in reads\$sampleID (if the reads are a data frame).

A vector of sample names.

aldex.clr

data(selex)
    #subset for efficiency
    selex <- selex[1201:1600,]
conds <- c(rep("NS", 7), rep("S", 7))
x <- aldex.clr(selex, conds, mc.samples = 2, denom = "all", verbose = FALSE)
sampleIDs <- getSampleIDs(x)