getMonteCarloReplicate-method: getMonteCarloReplicate

Description Usage Arguments Details Value See Also Examples

Description

Returns the designated Monte Carlo Dirochlet replicate generated from analysis, for an aldex.clr object.

Usage

1

Arguments

.object

A aldex.clr object containing the Monte Carlo Dirochlet instances derived from estimating the technical variance of the raw read count data, along with sample and feature information.

i

The numeric index of the desired replicate.

Details

Returns the designated Monte Carlo Dirochlet replicate generated from analysis.

Value

A data frame representing the designated Monte Carlo Dirochlet replicate generated from analysis.

See Also

aldex.clr

Examples

1
2
3
4
5
6
data(selex)
    #subset for efficiency
    selex <- selex[1201:1600,]
conds <- c(rep("NS", 7), rep("S", 7))
x <- aldex.clr(selex, conds, mc.samples = 2, denom = "all", verbose = FALSE)
monteCarloInstance <- getMonteCarloReplicate(x,1)

ALDEx2 documentation built on May 20, 2017, 9:54 p.m.

Search within the ALDEx2 package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.