numMCInstances-method: numMCInstances

In ALDEx2: Analysis Of Differential Abundance Taking Sample Variation Into Account

Description

Returns the number of Monte Carle Dirochlet instances generated for analysis, for an aldex.clr object.

Usage

numMCInstances(.object)

Arguments

.object

A aldex.clr object containing the Monte Carlo Dirochlet instances derived from estimating the technical variance of the raw read count data, along with sample and feature information.

Details

Returns the number of Monte Carle Dirochlet instances generated for analysis.

Value

A numeric representing the number of Monte Carle Dirochlet instances generated for analysis.

See Also

aldex.clr

Examples

data(selex)
    #subset for efficiency
    selex <- selex[1201:1600,]
conds <- c(rep("NS", 7), rep("S", 7))
x <- aldex.clr(selex, conds, mc.samples = 2, denom = "all", verbose = FALSE)
numInstances <- numMCInstances(x)

ALDEx2 documentation built on Nov. 8, 2020, 8:05 p.m.