Returns the count table used as input for analysis, for an aldex.clr object.
A aldex.clr object containing the Monte Carlo Dirochlet instances derived from estimating the technical variance of the raw read count data, along with sample and feature information.
Returns the count table.
A data frame representing the count table used as input for analysis.
#subset for efficiency
selex <- selex[1201:1600,]
conds <- c(rep("NS", 7), rep("S", 7))
x <- aldex.clr(selex, conds, mc.samples = 2, denom = "all", verbose = FALSE)
reads <- getReads(x)
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