getReads-method: getReads

In ALDEx2: Analysis Of Differential Abundance Taking Sample Variation Into Account

Description

Returns the count table used as input for analysis, for an aldex.clr object.

Usage

getReads(.object)

Arguments

.object

A aldex.clr object containing the Monte Carlo Dirochlet instances derived from estimating the technical variance of the raw read count data, along with sample and feature information.

Details

Returns the count table.

Value

A data frame representing the count table used as input for analysis.

See Also

aldex.clr

Examples

data(selex)
    #subset for efficiency
    selex <- selex[1201:1600,]
conds <- c(rep("NS", 7), rep("S", 7))
x <- aldex.clr(selex, conds, mc.samples = 2, denom = "all", verbose = FALSE)
reads <- getReads(x)

ALDEx2 documentation built on Nov. 8, 2020, 8:05 p.m.