Man pages for ALDEx2
Analysis Of Differential Abundance Taking Sample Variation Into Account

aldexCompute an 'aldex' Object
ALDEx2m-packageAnalysis of differential abundance taking sample variation...
aldex.clr-classThe aldex.clr class
aldex.clr.function-methodsCompute an 'aldex.clr' Object
aldex.corrcalculate Pearson's Product moment and Spearman's rank...
aldex.effectcalculate effect sizes and differences between conditions
aldex.glmcalculate glm and Kruskal Wallis test statistics
aldex.set.modeidentify set of denominator features for log-ratio...
aldex.ttestcalculate Welch's t-test and Wilcoxon test statistics
getDenom-methodgetDenom
getFeatureNames-methodgetFeatureNames
getFeatures-methodgetFeatures
getMonteCarloInstances-methodgetMonteCarloInstances
getMonteCarloReplicate-methodgetMonteCarloReplicate
getReads-methodgetReads
getSampleIDs-methodgetSampleIDs
numConditions-methodnumConditions
numFeatures-methodnumFeatures
numMCInstances-methodnumMCInstances
plot.aldexPlot an 'aldex' Object
selexSelection-based differential sequence variant abundance...
ALDEx2 documentation built on Nov. 17, 2017, 8:51 a.m.