aldex | Compute an 'aldex' Object |
ALDEx2m-package | Analysis of differential abundance taking sample variation... |
aldex.clr-class | The aldex.clr class |
aldex.clr.function-methods | Compute an 'aldex.clr' Object |
aldex.corr | Calculate correlation with a continuous variable |
aldex.effect | calculate effect sizes and differences between conditions |
aldex.glm | Calculate glm test statistics using a 'model.matrix' |
aldex.glm.effect | calculate effect sizes and differences between all constrasts... |
aldex.kw | Calculate the Kruskal-Wallis test and glm ANOVA statistics |
aldex.plotFeature | Show dispersion of the expected values returned by... |
aldex.set.mode | identify set of denominator features for log-ratio... |
aldex.ttest | Calculate Wilcoxon Rank Sum test and Welch's t-test... |
expectedDistance | Calculate the expected values of distances between samples,... |
getDenom-method | getDenom |
getFeatureNames-method | getFeatureNames |
getFeatures-method | getFeatures |
getMonteCarloInstances-method | getMonteCarloInstances |
getMonteCarloReplicate-method | getMonteCarloReplicate |
getMonteCarloSample-method | getMonteCarloSample |
getReads-method | getReads |
getSampleIDs-method | getSampleIDs |
numConditions-method | numConditions |
numFeatures-method | numFeatures |
numMCInstances-method | numMCInstances |
plot.aldex | Plot an 'aldex' Object |
selex | Selection-based differential sequence variant abundance... |
synth2 | Synthetic asymmetric dataset |
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