phaseMatrix2Array: phaseMatrix2Array

In AllelicImbalance: Investigates Allele Specific Expression

Description

used to convert the phase from the visually friendly matrix to array.

Usage

phaseMatrix2Array(x, ...)

## S4 method for signature 'matrix'
phaseMatrix2Array(x, dimnames = NULL, ...)

Arguments

x	matrix see examples
...	arguments to forward to internal functions
dimnames	list with dimnames

Details

A more effectice way of store the phase data in the ASEset object

Author(s)

Jesper R. Gadin, Lasse Folkersen

Examples

#load data
data(ASEset)
a <- ASEset

#example phase matrix
p1 <- matrix(sample(c(1,0),replace=TRUE, size=nrow(a)*ncol(a)),nrow=nrow(a), ncol(a))
p2 <- matrix(sample(c(1,0),replace=TRUE, size=nrow(a)*ncol(a)),nrow=nrow(a), ncol(a))
p <- matrix(paste(p1,sample(c("|","|","/"), size=nrow(a)*ncol(a), replace=TRUE), p2, sep=""),
	nrow=nrow(a), ncol(a))

ar <- phaseMatrix2Array(p)

AllelicImbalance documentation built on Nov. 8, 2020, 6:52 p.m.