Files in AlphaBeta
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
README.md
AlphaBeta documentation built on Nov. 8, 2020, 6:30 p.m.
NEWS
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
R/ABnull.R
R/ABselectMMSOMA.R
R/convertDMATRIX.R
R/time.R
R/rcMethlvl.R
R/checkFun.R
R/dataRead.R
R/ABplot.R
R/FtestRSS.R
R/ABneutral.R
R/ABselectMM.R
R/ABselectUUSOMA.R
R/BOOTmodel.R
R/ABselectUU.R
R/plotPedigree.R
R/ABneutralSOMA.R
R/D-matrices.R
R/buildPedigree.R
vignettes/AlphaBeta.Rmd
vignettes/alphabeta.png
man/ABselectUUSOMA.Rd
man/FtestRSS.Rd
man/ABselectUU.Rd
man/ABneutralSOMA.Rd
man/plotPedigree.Rd
man/BOOTmodel.Rd
man/ABplot.Rd
man/buildPedigree.Rd
man/ABselectMM.Rd
man/rc.meth.lvl.Rd
man/dMatrix.Rd
man/ABneutral.Rd
man/ABselectMMSOMA.Rd
man/ABnull.Rd
inst/doc/AlphaBeta.Rmd
inst/doc/AlphaBeta.R
inst/doc/AlphaBeta.pdf
inst/extdata/vg/Figure2.pdf
inst/extdata/vg/methylome-sample-region.png
inst/extdata/vg/nodelist.fn
inst/extdata/vg/MA1_3.pdf
inst/extdata/vg/edgelist_MA2_3.fn
inst/extdata/vg/MA1_1.pdf
inst/extdata/vg/ABneutralSOMA.pdf
inst/extdata/vg/nodelist_MA2_3.fn
inst/extdata/vg/nodelist_MA3.fn
inst/extdata/vg/ABneutral_MA1_1.pdf
inst/extdata/vg/Figure1.png
inst/extdata/vg/methylome-sample.png
inst/extdata/vg/SOMA1.pdf
inst/extdata/vg/edgelist.fn
inst/extdata/vg/MA1_2.pdf
inst/extdata/vg/Trees.png
inst/extdata/vg/edgelist_MA3.fn
inst/extdata/vg/MAlines.png
inst/extdata/vg/SOMA2.pdf
inst/extdata/vg/MA2_3.pdf
inst/extdata/vg/MA3.pdf
inst/extdata/data/G4_2.txt
inst/extdata/data/G4_8.txt
inst/extdata/data/G1_2.txt
inst/extdata/data/G0.txt
inst/extdata/dm/nodelist.fn
inst/extdata/dm/Col_CG_global_estimates_ABneutral.Rdata
inst/extdata/dm/tmp_nodelist.fn
inst/extdata/dm/edgelist.fn
inst/extdata/dm/output.rds
inst/extdata/models/ABselectUU_CG_global_estimates.Rdata
inst/extdata/models/ABneutral_Boot_CG_global_estimates.Rdata
inst/extdata/models/ABneutral_CG_global_estimates.Rdata
inst/extdata/models/ABselectMMSOMA_CG_global_estimates.Rdata
inst/extdata/models/ABneutralSOMA_CG_global_estimates.Rdata
inst/extdata/models/ABselectUUSOMA_CG_global_estimates.Rdata
inst/extdata/models/ABneutralSOMA_CG_Boot_global_estimates.Rdata
inst/extdata/models/ABnull_CG_global_estimates.Rdata
inst/extdata/models/ABselectMM_CG_global_estimates.Rdata
inst/extdata/soma/SOMA_edgelist2.fn
inst/extdata/soma/outputSoma.rds
inst/extdata/soma/SOMA_edgelist1.fn
inst/extdata/soma/SOMA_nodelist1.fn
inst/extdata/soma/SOMA_nodelist2.fn
