Man pages for CGEN
An R package for analysis of case-control studies in genetic epidemiology
| additive.test | A test for gene-environment interaction under an additive... |
| CGEN | An R package for analysis of case-control studies in genetic... |
| chromosome.plot | Manhattan plot |
| getMatchedSets | Case-Control and Nearest-Neighbor Matching |
| getSummary | Compute summary information |
| getWaldTest | Compute a Wald test |
| GxE.scan | GxE analysis for an array of SNPs |
| GxE.scan.combine | Combines output files into one file |
| GxE.scan.partition | Creates GxE.scan job files for a computing cluster |
| LocusMapData | Locus map data |
| locusMap.list | List to describe the locus map data |
| pheno.list | List to describe the covariate and outcome data |
| printEffects | Print an effects table |
| QQ.plot | QQ plot |
| snp.effects | Joint and Stratified Effects |
| snp.effects.plot | Effects plot |
| snp.list | List to describe the genotype data |
| snp.logistic | Logistic regression analysis for a single SNP |
| snp.matched | Robust G-G and G-E Interaction with Finely-Matched... |
| snp.score | Score Test |
| subject.list | List to describe the file of subject ids |
| Xdata | Sample covariate and outcome data |
