Files in CGEN
An R package for analysis of case-control studies in genetic epidemiology
NEWS
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
src/ccl.c
src/hcl.c
src/Additive.c
src/fsclust.c
src/pmatch.c
src/CML.c
src/score.c
src/csclust.f
data/LocusMapData.txt
data/Xdata.txt
R/R_getZ.general.r
R/wga_read.R
R/R_ro.th.small4.indep2.r
R/R_scoreTest.small.logit5.max.indep6.r
R/R_Pdg.xs.strat.dom.r
R/R_additiveTest.r
R/R_strCombine2.r
R/wga_GbyE_print.R
R/R_logLikBinom.add.reparam.general.r
R/R_getZ.dom.r
R/wga_glu.R
R/R_variablePrep2.r
R/wga_stream.GxE.R
R/snp_matched.R
R/R_getLogLike.mat.r
R/R_scoreTest.general9.r
R/R_getRR.general.r
R/R_multiGrep.r
R/score.test.R
R/R_myDummyVar.r
R/R_scoreTest.small.logit5.max.r
R/R_additiveTest.small.r
R/wga_stat.R
R/wga.R
R/R_mySnp.logistic2.r
R/additive.test.R
R/Modified_Wald_Test_Sandwich_v3.R
R/R_RERI.AP.S.r
R/wga_plot.R
R/R_myConvertLevel.r
R/wga_GbyE.R
R/R_makeBetaTable.general.r
R/R_myOR.CI3.r
R/wga_util.R
R/R_RERI.AP.S_retro.r
R/wga_impute.R
R/R_RERI.AP.S.small.r
R/R_myInteractMatrix2.r
R/R_myDummyVar3.r
R/R_match.order.r
R/R_logLikBinom.indep.r
R/getMatchedSets.R
R/source.SCORE.functions.R
R/R_logit.r
R/wga_stream.R
R/R_logLikBinom.indep.add.reparam3.general.r
R/R_getZ.datX.general.r
vignettes/vignette_GxE.Rnw
vignettes/vignette.Rnw
man/printEffects.Rd
man/chromosome.plot.Rd
man/LocusMapData.Rd
man/getSummary.Rd
man/GxE.scan.Rd
man/Xdata.Rd
man/snp.effects.plot.Rd
man/QQ.plot.Rd
man/locusMap.list.Rd
man/snp.score.Rd
man/snp.matched.Rd
man/pheno.list.Rd
man/GxE.scan.combine.Rd
man/snp.list.Rd
man/additive.test.Rd
man/getWaldTest.Rd
man/snp.logistic.Rd
man/CGEN.Rd
man/GxE.scan.partition.Rd
man/subject.list.Rd
man/getMatchedSets.Rd
man/snp.effects.Rd
inst/doc/vignette_GxE.R
inst/doc/vignette.R
inst/doc/vignette_GxE.Rnw
inst/doc/vignette.Rnw
inst/doc/vignette_GxE.pdf
inst/doc/vignette.pdf
inst/sampleData/SNPdata.rda
inst/sampleData/LocusMapData.txt
inst/sampleData/Xdata.txt
inst/sampleData/geno_data.ldat.gz
inst/sampleData/geno_imputed.txt.gz
inst/sampleData/geno_data.tped.gz
inst/sampleData/geno_data.tfam
inst/sampleData/subjects_imputed.txt
inst/sampleData/pheno.txt
