GxE.scan.combine: Combines output files into one file

In CGEN: An R package for analysis of case-control studies in genetic epidemiology

Description

Combines the output files from running GxE.scan on a cluster.

Usage

GxE.scan.combine(out.file, dir.or.files, pattern="GxEout_")

Arguments

out.file	Name of the output file of combined results. No default.
dir.or.files	Directory containing the output files from GxE.scan or the full names of the files to be combined. If length(dir.or.files) = 1, then it is assumed to be a directory. No default.
pattern	Character string to match file names when dir.or.files is a directory. The default is "GxEout_".

Details

This function would be called after all the submitted jobs from GxE.scan.partition have finished running. It is assumed that the files to be combined all have a header of variable names.

Value

A character vector of the files combined.

See Also

GxE.scan, GxE.scan.partition

Examples

 out.file <- "/data/results/all_output.txt"
 dir      <- "/data/out"
 # GxE.scan.combine(out.file, dir)

CGEN documentation built on April 28, 2020, 8:08 p.m.