printEffects: Print an effects table
In CGEN: An R package for analysis of case-control studies in genetic epidemiology

Description Usage Arguments Details Value See Also Examples

Prints an object returned from snp.logistic or snp.matched

1	printEffects(obj, op=NULL)

`obj`	The return object from `snp.logistic` or `snp.matched`. No default.
`op`	Options list with names "digits" and "method" (see details). The default is NULL.

Below are the names for the options list op. All names have default values if they are not specified.

digits Integer: Number of significant digits to print. The default is 2.
method Vector of values from "UML", "CML", "EB" or "CCL", "HCL", "CLR". The default is NULL.

Returns NULL

snp.effects

 # Use the ovarian cancer data
 data(Xdata, package="CGEN")

 # Fit using a stratification variable
 fit <- snp.logistic(Xdata, "case.control", "BRCA.status",
                     main.vars=c("oral.years", "n.children"), 
                     int.vars=c("oral.years", "n.children"), 
                     strata.var="ethnic.group")

 # Compute the effects
 effects <- snp.effects(fit, "oral.years", var.levels=c(0, 2, 3)) 

 printEffects(effects)