API for CNAnorm
A normalization method for Copy Number Aberration in cancer samples
| Global functions | |
|---|---|
| .InData.validity | Source code |
| .OTquantileWeights | Source code |
| .TTquantileWeights | Source code |
| .buildWarn | Source code |
| .calcWeight | Source code |
| .discreteNorm | Source code |
| .gaussianWeights | Source code |
| .gcNorm | Source code |
| .getWeight | Source code |
| .getWeightByChr | Source code |
| .peakPloidy | Source code |
| .poissonWeights | Source code |
| .pos | Source code |
| .validateParams | Source code |
| CN | Man page |
| CNAnorm | Man page |
| CNAnorm-class | Man page |
| CNAnormWorkflow | Man page Source code |
| DerivData-class | Man page |
| InData-class | Man page |
| LS041 | Man page |
| MQR | Source code |
| MQRDS | Source code |
| Params-class | Man page |
| R | Source code |
| Rb | Source code |
| Rcheck | Source code |
| Res.summary | Source code |
| [,CNAnorm-method | Man page |
| `smoothseg` | Source code |
| addDNACopy | Man page |
| addDNACopy,CNAnorm-method | Man page |
| addDNACopy-methods | Man page |
| addSmooth | Man page |
| addSmooth,CNAnorm-method | Man page |
| addSmooth-methods | Man page |
| arms | Man page |
| arms,CNAnorm-method | Man page |
| arms-methods | Man page |
| bandseg | Source code |
| brute.seg | Source code |
| brute.solve | Source code |
| bsolve00 | Source code |
| checkMethod | Source code |
| chrs | Man page |
| chrs,CNAnorm-method | Man page |
| chrs-methods | Man page |
| chrs<- | Man page |
| chrs<-,CNAnorm-method | Man page |
| chrs<--methods | Man page |
| dataFrame2object | Man page Source code |
| discreteNorm | Man page |
| discreteNorm,CNAnorm-method | Man page |
| discreteNorm-methods | Man page |
| exportTable | Man page |
| exportTable,CNAnorm-method | Man page |
| exportTable-methods | Man page |
| findOutliers | Source code |
| gPar | Man page |
| gcNorm | Man page |
| gcNorm,CNAnorm-method | Man page |
| gcNorm-methods | Man page |
| get.initial.values | Source code |
| get.optimal.k | Source code |
| get.optimal.k.reg | Source code |
| global.norm | Source code |
| hg19_hs_ideogr | Man page |
| inData.summary | Source code |
| justRatio | Source code |
| length,CNAnorm-method | Man page Man page |
| length,DerivData-method | Man page |
| length,InData-method | Man page |
| makeDataFrameFromSlots | Source code |
| makeDefaultGraphParamteres | Source code |
| makeNumericLabels | Source code |
| mapPeaks | Source code |
| medianWinSize | Source code |
| pdetect | Source code |
| pdetect.iter | Source code |
| peakPloidy | Man page |
| peakPloidy,CNAnorm-method | Man page |
| peakPloidy-methods | Man page |
| plotGenome | Man page |
| plotGenome,CNAnorm-method | Man page |
| plotGenome-methods | Man page |
| plotPeaks | Man page |
| plotPeaks,CNAnorm-method | Man page |
| plotPeaks-methods | Man page |
| pos | Man page |
| pos,CNAnorm-method | Man page |
| pos-methods | Man page |
| pos<- | Man page |
| pos<-,CNAnorm-method | Man page |
| pos<--methods | Man page |
| ratio | Man page |
| ratio,CNAnorm-method | Man page |
| ratio-methods | Man page |
| ratio.n | Man page |
| ratio.n,CNAnorm-method | Man page |
| ratio.n-methods | Man page |
| ratio.s | Man page |
| ratio.s,CNAnorm-method | Man page |
| ratio.s-methods | Man page |
| ratio.s.n | Man page |
| ratio.s.n,CNAnorm-method | Man page |
| ratio.s.n-methods | Man page |
| ratio2use | Source code |
| rseg | Source code |
| segMean | Man page |
| segMean,CNAnorm-method | Man page |
| segMean-methods | Man page |
| segMean.n | Man page |
| segMean.n,CNAnorm-method | Man page |
| segMean.n-methods | Man page |
| smooth.it | Source code |
| srsmooth | Source code |
| sugg.peaks | Man page |
| sugg.peaks,CNAnorm-method | Man page |
| sugg.peaks-methods | Man page |
| sugg.ploidy | Man page |
| sugg.ploidy,CNAnorm-method | Man page |
| sugg.ploidy-methods | Man page |
| suggest.k | Source code |
| userOrDefault | Source code |
| valid.peaks | Man page |
| valid.peaks,CNAnorm-method | Man page |
| valid.peaks-methods | Man page |
| valid.ploidy | Man page |
| valid.ploidy,CNAnorm-method | Man page |
| valid.ploidy-methods | Man page |
| validation | Man page |
| validation,CNAnorm-method | Man page |
| validation-methods | Man page |
