API for CausalR
Causal network analysis methods
| Global functions | |
|---|---|
| AddIDsToVertices | Man page Source code |
| AddWeightsToEdges | Man page Source code |
| AnalyseExperimentalData | Man page Source code |
| AnalysePredictionsList | Man page Source code |
| CalculateEnrichmentPValue | Man page Source code |
| CalculateSignificance | Man page Source code |
| CalculateSignificanceUsingCubicAlgorithm | Man page Source code |
| CalculateSignificanceUsingCubicAlgorithm1b | Man page Source code |
| CalculateSignificanceUsingQuarticAlgorithm | Man page Source code |
| CalculateTotalWeightForAllContingencyTables | Man page Source code |
| CalculateWeightGivenValuesInThreeByThreeContingencyTable | Man page Source code |
| CausalR | Man page |
| CausalR-package | Man page |
| CheckPossibleValuesAreValid | Man page Source code |
| CheckRowAndColumnSumValuesAreValid | Man page Source code |
| CompareHypothesis | Man page Source code |
| ComputeFinalDistribution | Man page Source code |
| ComputePValueFromDistributionTable | Man page Source code |
| CreateCCG | Man page Source code |
| CreateCG | Man page Source code |
| CreateNetworkFromTable | Man page Source code |
| DetermineInteractionTypeOfPath | Man page Source code |
| FindApproximateValuesThatWillMaximiseDValue | Man page Source code |
| FindIdsOfConnectedNodesInSubgraph | Man page Source code |
| FindMaximumDValue | Man page Source code |
| GetAllPossibleRoundingCombinations | Man page Source code |
| GetApproximateMaximumDValueFromThreeByTwoContingencyTable | Man page Source code |
| GetApproximateMaximumDValueFromTwoByTwoContingencyTable | Man page Source code |
| GetCombinationsOfCorrectandIncorrectPredictions | Man page Source code |
| GetExplainedNodesOfCCG | Man page Source code |
| GetInteractionInformation | Man page Source code |
| GetMatrixOfCausalRelationships | Man page Source code |
| GetMaxDValueForAFamily | Man page Source code |
| GetMaxDValueForAThreeByTwoFamily | Man page Source code |
| GetMaximumDValueFromTwoByTwoContingencyTable | Man page Source code |
| GetNodeID | Man page Source code |
| GetNodeName | Man page Source code |
| GetNumberOfPositiveAndNegativeEntries | Man page Source code |
| GetPathsInSifFormat | Man page Source code |
| GetRegulatedNodes | Man page Source code |
| GetRowAndColumnSumValues | Man page Source code |
| GetScoreForNumbersOfCorrectandIncorrectPredictions | Man page Source code |
| GetScoresForSingleNode | Man page Source code |
| GetScoresWeightsMatrix | Man page Source code |
| GetScoresWeightsMatrixByCubicAlg | Man page Source code |
| GetSetOfDifferentiallyExpressedGenes | Man page Source code |
| GetSetOfSignificantPredictions | Man page Source code |
| GetShortestPathsFromCCG | Man page Source code |
| GetWeightForNumbersOfCorrectandIncorrectPredictions | Man page Source code |
| GetWeightsAboveHypothesisScoreAndTotalWeights | Man page Source code |
| GetWeightsAboveHypothesisScoreForAThreeByTwoTable | Man page Source code |
| GetWeightsFromInteractionInformation | Man page Source code |
| MakePredictions | Man page Source code |
| MakePredictionsFromCCG | Man page Source code |
| MakePredictionsFromCG | Man page Source code |
| OrderHypotheses | Man page Source code |
| PlotGraphWithNodeNames | Man page Source code |
| PopulateTheThreeByThreeContingencyTable | Man page Source code |
| PopulateTwoByTwoContingencyTable | Man page Source code |
| ProcessExperimentalData | Man page Source code |
| RankTheHypotheses | Man page Source code |
| ReadExperimentalData | Man page Source code |
| ReadSifFileToTable | Man page Source code |
| RemoveIDsNotInExperimentalData | Man page Source code |
| ScoreHypothesis | Man page Source code |
| ValidateFormatOfDataTable | Man page Source code |
| ValidateFormatOfTable | Man page Source code |
| WriteAllExplainedNodesToSifFile | Man page Source code |
| WriteExplainedNodesToSifFile | Man page Source code |
| runRankHypothesis | Man page Source code |
| runSCANR | Man page Source code |
