The CeTF class is data storage class that stores all the
Returns an CeTF object.
Includes the raw, tpm and norm (see
Includes the uniquely differentially expressed genes/TFs and
the statistics for all genes (see
Includes input matrices for RIF (see
RIF) and PCIT
PCIT) for both conditions in
Includes the matrix output from RIF analysis
RIF) and a matrix with PCIT output, and other two matrix
with raw and significant adjacency (see
PCIT) for both conditions
runAnalysis function analysis.
Network with Gene-Gene and Gene-TF interactions for both
PCIT), main TFs resulted from the complete
analysis, all the TFs identified in the input data and matrix annotating all
genes and TFs.
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