OutputData-methods: Output data accessor for a CeTF class object.

In CeTF: Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis

Description

The output accessor access the output matrices and lists used for RIF and PCIT analysis to both conditions resulted from runAnalysis function analysis.

Usage

OutputData(x, analysis = "rif", type = "tab")

## S4 method for signature 'CeTF'
OutputData(x, analysis = "rif", type = "tab")

Arguments

x	CeTF-class object
analysis	Type of analysis: rif, pcit1, pcit2. The numbers 1 and 2 correspond to the respective condition (default: rif).
type	Type of matrix for PCIT output: tab, adj_raw or adj_sig (default: tab).

Value

Returns the Outputs used for RIF and PCIT.

See Also

runAnalysis.

Examples

# load the CeTF class object resulted from runAnalysis function
data(CeTFdemo)

OutputData(CeTFdemo)

CeTF documentation built on Nov. 25, 2020, 2 a.m.