contigs_qc: Filtered and annotated contigs of TCR from mice
In CellaRepertorium: Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)
Description
Data for c57bl6 and balbc mice TCR were downloaded from 10x Genomics website as
shown in system.file('script/10XMouseTCR_v3_chem.R', package = 'CellaRepertorium').
Additional processing of these data is done in the vignette mouse_tcell_qc
and are serialized to serve as an examples for other vignettes and documentation.
Usage
1
Format
A data frame of 3399 contigs and 22 fields,
all except 4 are originally defined in https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/output/annotation#contig
The following fields were defined ex post facto.
-
anno_file: Path to original csv file
-
pop: Mouse strain.
-
sample: An artificial "replicate" from the original data defined by subsampling with replacement
-
celltype: The putative cell type of the contig.
CellaRepertorium documentation built on Nov. 8, 2020, 7:48 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Data for c57bl6 and balbc mice TCR were downloaded from 10x Genomics website as
shown in system.file('script/10XMouseTCR_v3_chem.R', package = 'CellaRepertorium').
Additional processing of these data is done in the vignette mouse_tcell_qc
and are serialized to serve as an examples for other vignettes and documentation.
Usage
1 |
Format
A data frame of 3399 contigs and 22 fields, all except 4 are originally defined in https://support.10xgenomics.com/single-cell-vdj/software/pipelines/latest/output/annotation#contig The following fields were defined ex post facto.
-
anno_file: Path to original csv file -
pop: Mouse strain. -
sample: An artificial "replicate" from the original data defined by subsampling with replacement -
celltype: The putative cell type of the contig.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.